C. porcellus Gene: POPDC3 - ENSCPOG00000006187 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000006187
NamePOPDC3
Descriptionpopeye domain containing 3 [Source:HGNC Symbol;Acc:HGNC:17649]
OrganismCavia porcellus (guinea pig)
Synonym(s)ba355m14.1, mgc22671, pop3
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.72e3
  • 1.72e3
91.22
  • 91.22
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000068embryo stage
3.52e3
  • 3.52e3
  • 4.50e3
82.09
  • 82.09
  • 77.07
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
3.78e3
  • 3.78e3
80.76
  • 80.76
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
6.46e3
  • 6.46e3
67.10
  • 67.10
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
38.18
  • 38.18
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
32.15
  • 32.15
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
31.72
  • 31.72
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
26.15
  • 26.15
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
25.53
  • 25.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000006187.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSCPOG00000006187.

Cross-references

EnsemblENSCPOG00000006187 (POPDC3)
HGNCHGNC:17649 (POPDC3)
EMBLAAKN02044791
Uniprot/SPTREMBLH0V781, H0V781_CAVPO

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