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C. porcellus Gene: SPATC1L - ENSCPOG00000008358 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000008358
NameSPATC1L
Descriptionspermatogenesis and centriole associated 1-like [Source:HGNC Symbol;Acc:HGNC:1298]
OrganismCavia porcellus (guinea pig)
Synonym(s)c21orf56
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
993
  • 993
94.95
  • 94.95
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
39.19
  • 39.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
33.87
  • 33.87
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
33.54
  • 33.54
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
32.99
  • 32.99
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
32.20
  • 32.20
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
31.80
  • 31.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
30.95
  • 30.95
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
27.47
  • 27.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
18.05
  • 18.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000008358.

Cross-references

EnsemblENSCPOG00000008358 (SPATC1L)
HGNCHGNC:1298 (SPATC1L)
EMBLAAKN02051914
Uniprot/SPTREMBLH0VC63, H0VC63_CAVPO

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