C. porcellus Gene: COL10A1 - ENSCPOG00000009416 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000009416
NameCOL10A1
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismCavia porcellus (guinea pig)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002084heart left ventricle
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
  • 1.35e4
31.92
  • 31.92
  • 31.19
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
23.04
  • 23.04
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
17.07
  • 17.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000009416.

Cross-references

EnsemblENSCPOG00000009416 (COL10A1)
HGNCHGNC:2185 (COL10A1)
EMBLAAKN02043537
Uniprot/SPTREMBLH0VEK5, H0VEK5_CAVPO

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