C. porcellus Gene: DEPDC1B - ENSCPOG00000011483 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000011483
NameDEPDC1B
DescriptionDEP domain containing 1B [Source:HGNC Symbol;Acc:HGNC:24902]
OrganismCavia porcellus (guinea pig)
Synonym(s)brcc3, xtp1
Orthologs(s)20 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
3.99e3
  • 3.99e3
79.66
  • 79.66
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
45.67
  • 45.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
40.61
  • 40.61
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
35.59
  • 35.59
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
29.72
  • 29.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
24.65
  • 24.65
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
24.00
  • 24.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species15 genesCompare expression
Mammalia15 species16 genesCompare expression
Amniota17 species18 genesCompare expression
Tetrapoda18 species19 genesCompare expression
Euteleostomi19 species20 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000011483.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSCPOG00000011483.

Cross-references

EnsemblENSCPOG00000011483 (DEPDC1B)
HGNCHGNC:24902 (DEPDC1B)
EMBLAAKN02031372, AAKN02031373, AAKN02031374
Uniprot/SPTREMBLH0VJA2, H0VJA2_CAVPO

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