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C. porcellus Gene: PGBD2 - ENSCPOG00000019992 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000019992
NamePGBD2
DescriptionpiggyBac transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:19399]
OrganismCavia porcellus (guinea pig)
Orthologs(s)10 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
36.97
  • 36.97
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
33.22
  • 33.22
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
27.88
  • 27.88
AEIR
  • AEIR
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
27.50
  • 27.50
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
20.57
  • 20.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires1 species1 geneCompare expression
Euarchontoglires5 species5 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Theria10 species10 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000019992.

Cross-references

EnsemblENSCPOG00000019992 (PGBD2)
HGNCHGNC:19399 (PGBD2)
EMBLAAKN02002615
Uniprot/SPTREMBLH0W6J1, H0W6J1_CAVPO

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