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C. porcellus Gene: SYNPO2 - ENSCPOG00000020548 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000020548
NameSYNPO2
Descriptionsynaptopodin 2 [Source:HGNC Symbol;Acc:HGNC:17732]
OrganismCavia porcellus (guinea pig)
Synonym(s)myopodin
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000002uterine cervix
  • UBERON:0000113post-juvenile adult stage
865
  • 865
95.60
  • 95.60
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000068embryo stage
3.25e3
  • 3.25e3
  • 5.84e3
83.46
  • 83.46
  • 70.24
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
3.69e3
  • 3.69e3
81.21
  • 81.21
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
6.67e3
  • 6.67e3
66.02
  • 66.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
8.65e3
  • 8.65e3
55.95
  • 55.95
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
8.96e3
  • 8.96e3
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
9.76e3
  • 9.76e3
50.28
  • 50.28
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
48.55
  • 48.55
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
47.95
  • 47.95
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
45.13
  • 45.13
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
37.49
  • 37.49
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
36.89
  • 36.89
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
32.95
  • 32.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000020548.

Cross-references

EnsemblENSCPOG00000020548 (SYNPO2)
HGNCHGNC:17732 (SYNPO2)
EMBLAAKN02011265
Uniprot/SPTREMBLH0WCL6, H0WCL6_CAVPO

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