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C. porcellus Gene: NKX6-1 - ENSCPOG00000026192 - Cavia porcellus (guinea pig)

General information

Ensembl IDENSCPOG00000026192
NameNKX6-1
DescriptionNK6 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7839]
OrganismCavia porcellus (guinea pig)
Synonym(s)nkx6.1, nkx6a
Orthologs(s)2 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
6.19e3
  • 6.19e3
68.46
  • 68.46
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
47.87
  • 47.87
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
37.06
  • 37.06
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
35.96
  • 35.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
17.46
  • 17.46
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
15.57
  • 15.57
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
13.38
  • 13.38
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
12.14
  • 12.14
AEIR
  • AEIR
UBERON:0002046thyroid gland
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
7.77
  • 7.77
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
6.87
  • 6.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Boreoeutheria1 species1 geneCompare expression
Mammalia2 species2 genesCompare expression

Orthology information comes from OMA : ENSCPOG00000026192.

Cross-references

EnsemblENSCPOG00000026192 (NKX6-1)
HGNCHGNC:7839 (NKX6-1)
EMBLAAKN02033451
Uniprot/SPTREMBLH0WCG9, H0WCG9_CAVPO

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