D. rerio Gene: opn1mw4 - ENSDARG00000000638 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000000638
Nameopn1mw4
Descriptionopsin 1 (cone pigments), medium-wave-sensitive, 4 [Source:ZFIN;Acc:ZDB-GENE-990604-43]
OrganismDanio rerio (zebrafish)
Synonym(s)fk64b02, grops2, q8aym6, rh2-4, rh2.4, rh24, wu:fk64b02, zfgr2
Orthologs(s)2 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.30e3
  • 2.30e3
92.30
  • 92.30
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.47e4
  • 1.83e4
57.14
  • 57.14
  • 50.68
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.61e4
  • 2.61e4
12.73
  • 12.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000000638.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000000638.

Cross-references

EnsemblENSDARG00000000638 (opn1mw4)
ZFINZDB-GENE-990604-43 (opn1mw4)
EMBLAB087808, AF109370, AL732567, BC059503
Uniprot/SWISSPROTOPSG4_DANRE, Q9W6A6

Do not show this banner again