D. rerio Gene: slc6a13l - ENSDARG00000001354 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000001354
Nameslc6a13l
Descriptionsolute carrier family 6 (neurotransmitter transporter, GABA), member 13 like [Source:ZFIN;Acc:ZDB-GENE-030616-628]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-263a23.6, si:zc263a23.6, slc6a6
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.91
  • 94.91
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.10
  • 89.10
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.62
  • 73.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.46e3
  • 8.46e3
71.67
  • 71.67
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
9.03e3
  • 9.03e3
  • 1.50e4
69.76
  • 69.76
  • 49.80
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.19e4
65.22
  • 65.22
  • 60.26
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.16e4
  • 1.16e4
  • 1.55e4
  • 1.59e4
  • 1.92e4
  • 1.94e4
61.17
  • 61.17
  • 48.08
  • 46.75
  • 35.61
  • 34.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
57.17
  • 57.17
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.87
  • 55.87
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.21
  • 54.21
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.96
  • 50.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.13
  • 49.13
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.18
  • 39.18
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
  • 1.94e4
38.60
  • 38.60
  • 35.02
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
36.98
  • 36.98
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.36
  • 33.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.11
  • 32.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.94
  • 30.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria11 genesCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000001354.

Cross-references

EnsemblENSDARG00000001354 (slc6a13l)
ZFINZDB-GENE-030616-628 (slc6a13l)
EMBLAL732567
Uniprot/SPTREMBLF1Q5E6, F1Q5E6_DANRE

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