D. rerio Gene: mhc1zea - ENSDARG00000001470 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000001470
Namemhc1zea
Descriptionmajor histocompatibility complex class I ZEA [Source:ZFIN;Acc:ZDB-GENE-070705-176]
OrganismDanio rerio (zebrafish)
Synonym(s)dz63m10.3, si:ch211-287j19.6, zgc:162351
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
914
  • 914
96.94
  • 96.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.90
  • 92.90
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.34e3
  • 2.34e3
  • 1.16e4
92.18
  • 92.18
  • 61.08
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.12
  • 92.12
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.59e3
  • 2.59e3
  • 5.72e3
91.34
  • 91.34
  • 80.85
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
88.04
  • 88.04
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.63e3
  • 3.63e3
87.86
  • 87.86
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.31
  • 87.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.16e3
  • 4.16e3
86.07
  • 86.07
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.36e3
  • 4.36e3
85.39
  • 85.39
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.60
  • 84.60
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.54
  • 80.54
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.91e3
  • 5.91e3
  • 7.31e3
80.20
  • 80.20
  • 75.52
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.56e3
  • 7.56e3
74.69
  • 74.69
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
7.59e3
  • 7.59e3
74.57
  • 74.57
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
7.78e3
  • 7.78e3
  • 8.23e3
  • 9.22e3
  • 1.02e4
  • 1.07e4
73.94
  • 73.94
  • 72.45
  • 69.13
  • 65.76
  • 64.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
8.21e3
  • 8.21e3
  • 1.29e4
72.50
  • 72.50
  • 56.96
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.61e3
  • 8.61e3
  • 1.38e4
71.16
  • 71.16
  • 53.95
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.44e3
  • 9.44e3
68.39
  • 68.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.34
  • 65.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.74
  • 60.74
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
54.84
  • 54.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi5 genesCompare expression
Clupeocephala6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000001470.

Cross-references

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