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D. rerio Gene: stxbp1a - ENSDARG00000001994 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000001994
Namestxbp1a
Descriptionsyntaxin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050626-106]
OrganismDanio rerio (zebrafish)
Synonym(s)fj43h10, stxbp1, wu:fj36d12, wu:fj43h10, zgc:114171
Orthologs(s)23 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
129
  • 129
99.57
  • 99.57
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
240
  • 240
99.20
  • 99.20
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
519
  • 519
  • 950
98.26
  • 98.26
  • 96.82
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
568
  • 568
  • 866
  • 2.95e3
  • 3.97e3
  • 5.27e3
98.10
  • 98.10
  • 97.10
  • 90.13
  • 86.70
  • 82.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.07e3
  • 1.07e3
  • 2.08e3
96.40
  • 96.40
  • 93.05
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.67e3
  • 1.67e3
94.41
  • 94.41
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 7.97e3
  • 9.96e3
85.71
  • 85.71
  • 73.32
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
8.40e3
  • 8.40e3
  • 8.96e3
  • 8.96e3
  • 9.60e3
  • 9.60e3
  • 9.96e3
71.86
  • 71.86
  • 69.99
  • 69.99
  • 67.85
  • 67.85
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.33e3
  • 1.28e4
71.42
  • 71.42
  • 69.22
  • 68.74
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
65.61
  • 65.61
  • 65.61
  • 65.37
  • 64.98
  • 64.98
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.17
  • 62.17
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000035Larval:Protruding-mouth
1.17e4
  • 1.17e4
  • 1.49e4
  • 1.49e4
60.70
  • 60.70
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000039Larval:Days 7-13
1.28e4
  • 1.28e4
  • 1.33e4
  • 1.49e4
57.14
  • 57.14
  • 55.53
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.15
  • 56.15
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
1.34e4
  • 1.34e4
  • 1.37e4
  • 1.49e4
55.24
  • 55.24
  • 54.15
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.34e4
55.24
  • 55.24
  • 54.99
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
  • 1.75e4
53.78
  • 53.78
  • 41.47
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.01
  • 47.01
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.22
  • 45.22
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.25
  • 42.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.58
  • 40.58
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.44
  • 38.44
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.07
  • 37.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000001994.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000001994.

Cross-references

EnsemblENSDARG00000001994 (stxbp1a)
ZFINZDB-GENE-050626-106 (stxbp1a)
EMBLBX470221
Uniprot/SPTREMBLF1QM13, F1QM13_DANRE, F1RAZ4, F1RAZ4_DANRE

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