D. rerio Gene: rho - ENSDARG00000002193 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000002193
Namerho
Descriptionrhodopsin [Source:ZFIN;Acc:ZDB-GENE-990415-271]
OrganismDanio rerio (zebrafish)
Synonym(s)fi06d11, opsin-like gene, q9pwn4, rh, rh1, rh1.1, rod opsin, wu:fi06d11, zfo2, zfrho

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
2.95
  • 2.95
  • 32.6
  • 3.85e3
  • 7.47e3
  • 1.05e4
  • 1.12e4
  • 1.17e4
  • 1.20e4
  • 1.48e4
99.99
  • 99.99
  • 99.89
  • 87.13
  • 75.00
  • 64.98
  • 62.50
  • 60.84
  • 59.98
  • 50.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
26.3
  • 26.3
  • 88.0
99.92
  • 99.92
  • 99.71
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
164
  • 164
  • 8.02e3
  • 2.02e4
  • 2.55e4
  • 2.57e4
99.45
  • 99.45
  • 73.14
  • 32.47
  • 14.70
  • 14.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
247
  • 247
  • 398
  • 5.77e3
99.18
  • 99.18
  • 98.67
  • 80.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
260
  • 260
  • 481
  • 531
  • 738
  • 3.81e3
  • 8.34e3
  • 1.57e4
  • 1.79e4
  • 1.80e4
99.13
  • 99.13
  • 98.39
  • 98.22
  • 97.53
  • 87.24
  • 72.07
  • 47.27
  • 40.18
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.18e3
  • 1.18e3
  • 2.36e3
96.05
  • 96.05
  • 92.09
AEIR
  • AEIR
  • AEIR
CL:0000604retinal rod cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 1.49e4
  • 1.49e4
87.50
  • 87.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
4.98e3
  • 4.98e3
  • 5.60e3
  • 7.47e3
  • 7.47e3
83.34
  • 83.34
  • 81.25
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.10e4
  • 1.10e4
  • 1.20e4
63.14
  • 63.14
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
  • 2.14e4
48.07
  • 48.07
  • 28.24
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.57e4
  • 1.57e4
47.41
  • 47.41
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.72e4
  • 2.72e4
8.76
  • 8.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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