D. rerio Gene: si:ch211-225b11.1 - ENSDARG00000002405 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000002405
Namesi:ch211-225b11.1
Descriptionsi:ch211-225b11.1 [Source:ZFIN;Acc:ZDB-GENE-060531-39]
OrganismDanio rerio (zebrafish)
Paralog(s)29 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.71
  • 84.71
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.49e3
  • 7.49e3
  • 1.21e4
74.92
  • 74.92
  • 59.38
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
72.67
  • 72.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
71.81
  • 71.81
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.54
  • 70.54
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.12e3
  • 9.12e3
69.47
  • 69.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
69.44
  • 69.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.83
  • 66.83
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
  • 1.20e4
  • 1.26e4
  • 1.31e4
  • 1.74e4
64.83
  • 64.83
  • 59.90
  • 57.80
  • 56.05
  • 41.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.06e4
  • 1.06e4
  • 1.12e4
64.35
  • 64.35
  • 62.51
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.99
  • 61.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.22
  • 60.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
57.41
  • 57.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
56.99
  • 56.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.74
  • 56.74
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.71
  • 52.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.57e4
  • 1.57e4
  • 1.73e4
47.37
  • 47.37
  • 42.23
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.82e4
  • 1.82e4
39.20
  • 39.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Eukaryota29 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000002405.

Cross-references

EnsemblENSDARG00000002405 (si:ch211-225b11.1)
ZFINZDB-GENE-060531-39 (si:ch211-225b11.1)
EMBLBX927203
Uniprot/SPTREMBLA2BIG0, A2BIG0_DANRE, F1QIK2, F1QIK2_DANRE

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