D. rerio Gene: pabpc1l - ENSDARG00000002597 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000002597
Namepabpc1l
Descriptionpoly(A) binding protein, cytoplasmic 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-5836]
OrganismDanio rerio (zebrafish)
Synonym(s)ch1073-323j3.1, fi20g03, km0002, pab-2, wu:fi20g03, zgc:55855
Orthologs(s)8 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
331
  • 331
  • 1.36e4
98.90
  • 98.90
  • 54.31
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
497
  • 497
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
619
  • 619
97.93
  • 97.93
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
867
  • 867
  • 1.65e3
  • 2.23e3
  • 2.36e3
  • 3.71e3
97.10
  • 97.10
  • 94.49
  • 92.53
  • 92.10
  • 87.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.57e3
  • 1.57e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.22
  • 94.22
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
2.20e3
  • 2.20e3
  • 8.31e3
  • 1.23e4
  • 1.27e4
  • 1.37e4
  • 1.38e4
  • 1.41e4
  • 1.47e4
  • 1.56e4
92.65
  • 92.65
  • 72.18
  • 58.98
  • 57.34
  • 54.11
  • 53.80
  • 52.63
  • 50.90
  • 47.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.62e3
  • 2.62e3
91.23
  • 91.23
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.88e3
  • 2.88e3
90.35
  • 90.35
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.18e3
  • 3.18e3
89.34
  • 89.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
3.26e3
  • 3.26e3
  • 6.71e3
  • 1.13e4
  • 1.13e4
  • 1.22e4
  • 1.33e4
89.08
  • 89.08
  • 77.53
  • 62.19
  • 62.16
  • 59.11
  • 55.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.58e3
  • 4.58e3
84.65
  • 84.65
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.36
  • 79.36
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
78.78
  • 78.78
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000106zygote stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
1.14e4
  • 1.14e4
  • 1.16e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
61.88
  • 61.88
  • 61.10
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 58.31
  • 57.47
  • 49.99
  • 49.99
  • 49.99
  • 49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.40
  • 55.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.44e4
53.83
  • 53.83
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.24
  • 44.24
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
1.78e4
  • 1.78e4
  • 2.26e4
40.40
  • 40.40
  • 24.35
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
27.21
  • 27.21
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.24e4
  • 2.24e4
24.89
  • 24.89
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.35
  • 24.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.08
  • 24.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.54e4
  • 2.54e4
14.91
  • 14.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species8 genesCompare expression

Orthology information comes from OMA : ENSDARG00000002597.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000002597.

Cross-references

EnsemblENSDARG00000002597 (pabpc1l)
ZFINZDB-GENE-030131-5836 (pabpc1l)
EMBLAY398370, CABZ01066151, CU655816
Uniprot/SPTREMBLB8K0D5, B8K0D5_DANRE, B8K0D6, B8K0D6_DANRE, Q6TGY6, Q6TGY6_DANRE

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