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D. rerio Gene: tcea1 - ENSDARG00000003531 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000003531
Nametcea1
Descriptiontranscription elongation factor A (SII), 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8049]
OrganismDanio rerio (zebrafish)
Synonym(s)fj48e12, wu:fj48e12, zgc:63975
Orthologs(s)19 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
304
  • 304
  • 500
  • 509
  • 678
  • 781
  • 857
98.98
  • 98.98
  • 98.33
  • 98.30
  • 97.73
  • 97.39
  • 97.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
318
  • 318
  • 486
  • 519
  • 604
  • 722
  • 1.01e3
  • 1.17e3
  • 1.51e3
  • 1.62e3
  • 1.67e3
  • 2.10e3
  • 2.58e3
  • 2.85e3
  • 2.95e3
98.94
  • 98.94
  • 98.38
  • 98.26
  • 97.98
  • 97.59
  • 96.62
  • 96.07
  • 94.95
  • 94.57
  • 94.42
  • 92.97
  • 91.36
  • 90.47
  • 90.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
338
  • 338
  • 452
  • 527
  • 659
  • 692
98.87
  • 98.87
  • 98.49
  • 98.24
  • 97.80
  • 97.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
582
  • 582
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
588
  • 588
98.03
  • 98.03
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
601
  • 601
  • 671
  • 4.04e3
  • 4.14e3
97.99
  • 97.99
  • 97.76
  • 86.46
  • 86.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
779
  • 779
97.40
  • 97.40
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
868
  • 868
97.10
  • 97.10
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
892
  • 892
97.02
  • 97.02
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
1.01e3
  • 1.01e3
  • 1.09e3
  • 1.11e3
  • 1.34e3
  • 1.36e3
  • 1.45e3
  • 1.48e3
  • 1.62e3
  • 1.62e3
  • 2.34e3
96.63
  • 96.63
  • 96.35
  • 96.30
  • 95.50
  • 95.44
  • 95.15
  • 95.05
  • 94.60
  • 94.59
  • 92.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.28e3
  • 1.28e3
95.71
  • 95.71
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
  • 3.65e3
95.50
  • 95.50
  • 87.79
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.35e3
  • 1.35e3
  • 2.67e3
95.49
  • 95.49
  • 91.05
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
94.55
  • 94.55
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.30
  • 93.30
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
2.41e3
  • 2.41e3
  • 2.47e3
  • 2.52e3
91.92
  • 91.92
  • 91.73
  • 91.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
  • 3.09e3
90.14
  • 90.14
  • 89.64
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
90.00
  • 90.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.34e3
  • 3.34e3
  • 4.92e3
88.82
  • 88.82
  • 83.54
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.53
  • 88.53
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.57
  • 87.57
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.52
  • 87.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
86.79
  • 86.79
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.56
  • 86.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
85.62
  • 85.62
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.37e3
  • 4.37e3
85.37
  • 85.37
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
83.35
  • 83.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.08e3
  • 5.08e3
82.99
  • 82.99
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.13e3
  • 5.13e3
82.81
  • 82.81
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.43
  • 82.43
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.94e3
  • 6.94e3
76.77
  • 76.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi10 species13 genesCompare expression
Bilateria16 species19 genesCompare expression

Orthology information comes from OMA : ENSDARG00000003531.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000003531.

Cross-references

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