D. rerio Gene: acsl1b - ENSDARG00000003854 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000003854
Nameacsl1b
Descriptionacyl-CoA synthetase long-chain family member 1b [Source:ZFIN;Acc:ZDB-GENE-040801-88]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101071
Orthologs(s)26 orthologs
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
218
  • 218
99.27
  • 99.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
477
  • 477
  • 2.07e3
  • 7.97e3
  • 8.65e3
98.41
  • 98.41
  • 93.08
  • 73.32
  • 71.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.18e3
  • 1.18e3
  • 1.30e3
  • 1.86e3
  • 3.07e3
  • 3.30e3
  • 3.52e3
  • 3.94e3
  • 4.86e3
  • 5.30e3
  • 9.50e3
96.04
  • 96.04
  • 95.66
  • 93.78
  • 89.71
  • 88.96
  • 88.21
  • 86.82
  • 83.73
  • 82.25
  • 68.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
1.33e3
  • 1.33e3
  • 1.60e3
  • 2.30e3
  • 2.37e3
  • 2.56e3
  • 2.93e3
  • 3.11e3
  • 3.20e3
  • 3.56e3
  • 4.67e3
  • 5.92e3
  • 6.66e3
  • 1.17e4
  • 1.31e4
95.54
  • 95.54
  • 94.63
  • 92.29
  • 92.07
  • 91.42
  • 90.20
  • 89.58
  • 89.29
  • 88.09
  • 84.38
  • 80.16
  • 77.71
  • 60.86
  • 56.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
2.13e3
  • 2.13e3
  • 2.13e3
  • 4.39e3
  • 4.39e3
  • 4.67e3
  • 7.97e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
92.86
  • 92.86
  • 92.86
  • 85.29
  • 85.29
  • 84.37
  • 73.32
  • 70.57
  • 70.57
  • 69.99
  • 69.99
  • 69.99
  • 58.80
  • 57.68
  • 57.13
  • 57.13
  • 57.13
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
92.02
  • 92.02
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.39
  • 89.39
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
3.57e3
  • 3.57e3
  • 4.83e3
  • 7.86e3
  • 7.93e3
  • 9.82e3
  • 1.28e4
88.05
  • 88.05
  • 83.84
  • 73.70
  • 73.45
  • 67.12
  • 57.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
3.91e3
  • 3.91e3
  • 4.48e3
  • 8.61e3
86.91
  • 86.91
  • 85.01
  • 71.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.64e3
  • 4.64e3
84.48
  • 84.48
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.71e3
  • 4.71e3
84.22
  • 84.22
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.80e3
  • 4.80e3
83.92
  • 83.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.07
  • 83.07
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.24e3
  • 5.24e3
  • 1.45e4
82.45
  • 82.45
  • 51.35
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
81.11
  • 81.11
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.67e3
  • 5.67e3
81.01
  • 81.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.81e3
  • 5.81e3
80.55
  • 80.55
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
6.27e3
  • 6.27e3
  • 8.58e3
79.00
  • 79.00
  • 71.28
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
  • 1.57e4
78.16
  • 78.16
  • 47.56
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.08e3
  • 7.91e3
  • 8.40e3
  • 9.34e3
  • 9.34e3
77.49
  • 77.49
  • 77.49
  • 76.30
  • 73.52
  • 71.86
  • 68.74
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
6.81e3
  • 6.81e3
  • 8.50e3
  • 1.36e4
  • 1.37e4
77.19
  • 77.19
  • 71.55
  • 54.59
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
6.89e3
  • 6.89e3
  • 6.97e3
  • 8.30e3
76.92
  • 76.92
  • 76.66
  • 72.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.09e3
  • 7.09e3
76.25
  • 76.25
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.91e3
  • 9.67e3
  • 9.67e3
74.99
  • 74.99
  • 73.52
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
74.99
  • 74.99
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.57e3
  • 7.57e3
74.65
  • 74.65
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.86e3
  • 7.86e3
  • 7.86e3
73.67
  • 73.67
  • 73.67
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.26e3
  • 8.26e3
  • 9.16e3
  • 1.12e4
  • 1.45e4
72.36
  • 72.36
  • 69.32
  • 62.54
  • 51.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.88
  • 71.88
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.49
  • 67.49
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.10e4
  • 1.10e4
63.14
  • 63.14
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.14e4
  • 1.14e4
61.70
  • 61.70
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.57
  • 60.57
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.60
  • 58.60
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.25e4
  • 1.25e4
58.12
  • 58.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000003854.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000003854 (acsl1b)
ZFINZDB-GENE-040801-88 (acsl1b)
EMBLCU462913
Uniprot/SPTREMBLF1QCU1, F1QCU1_DANRE, F1QDA6, F1QDA6_DANRE

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