D. rerio Gene: zgc:92630 - ENSDARG00000004141 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000004141
Namezgc:92630
Descriptionzgc:92630 [Source:ZFIN;Acc:ZDB-GENE-040718-449]
OrganismDanio rerio (zebrafish)
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
736
  • 736
97.54
  • 97.54
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
95.91
  • 95.91
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.37e3
  • 2.37e3
  • 3.93e3
  • 5.98e3
  • 8.53e3
  • 9.75e3
  • 1.01e4
  • 1.03e4
  • 1.03e4
  • 1.04e4
  • 1.05e4
  • 1.07e4
  • 1.11e4
  • 1.17e4
92.08
  • 92.08
  • 86.85
  • 79.97
  • 71.45
  • 67.36
  • 66.23
  • 65.39
  • 65.35
  • 65.28
  • 64.97
  • 64.17
  • 62.99
  • 60.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
89.78
  • 89.78
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.70e3
  • 3.70e3
  • 1.08e4
87.63
  • 87.63
  • 63.87
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.16
  • 85.16
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.53e3
  • 4.53e3
84.82
  • 84.82
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.23e3
  • 5.23e3
82.51
  • 82.51
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
5.65e3
  • 5.65e3
  • 7.69e3
  • 1.25e4
  • 1.26e4
  • 1.31e4
  • 1.42e4
  • 1.47e4
  • 1.52e4
  • 1.78e4
81.09
  • 81.09
  • 74.26
  • 58.17
  • 57.67
  • 56.18
  • 52.54
  • 50.94
  • 49.10
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.41e3
  • 6.41e3
  • 1.26e4
78.53
  • 78.53
  • 57.75
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.91e3
  • 6.91e3
  • 7.10e3
  • 8.64e3
76.86
  • 76.86
  • 76.24
  • 71.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.46e3
  • 7.46e3
75.02
  • 75.02
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
9.28e3
  • 9.28e3
68.92
  • 68.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.22e4
  • 1.22e4
  • 1.48e4
  • 1.49e4
  • 1.68e4
  • 1.69e4
59.04
  • 59.04
  • 50.43
  • 50.14
  • 43.69
  • 43.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.48
  • 58.48
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.33e4
56.76
  • 56.76
  • 55.52
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.30e4
  • 1.30e4
56.38
  • 56.38
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.78
  • 49.78
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.60e4
  • 1.60e4
46.28
  • 46.28
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
  • 1.85e4
44.04
  • 44.04
  • 38.01
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.61
  • 42.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.94
  • 31.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression
Metazoa3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000004141.

Cross-references

EnsemblENSDARG00000004141 (zgc:92630)
ZFINZDB-GENE-040718-449 (zgc:92630)
EMBLCR855391, CU633486
Uniprot/SPTREMBLF1QDB3, F1QDB3_DANRE

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