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D. rerio Gene: slc8a3 - ENSDARG00000004931 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000004931
Nameslc8a3
Descriptionsolute carrier family 8 (sodium/calcium exchanger), member 3 [Source:ZFIN;Acc:ZDB-GENE-050810-1]
OrganismDanio rerio (zebrafish)
Synonym(s)ncx3
Orthologs(s)25 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.31
  • 75.31
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
9.21e3
  • 9.21e3
69.15
  • 69.15
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.29e4
  • 1.29e4
  • 1.59e4
  • 1.61e4
  • 1.62e4
  • 1.94e4
56.79
  • 56.79
  • 46.69
  • 46.10
  • 45.79
  • 35.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.11
  • 56.11
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.67
  • 43.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.42
  • 39.42
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.25
  • 38.25
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
  • 1.99e4
36.24
  • 36.24
  • 33.45
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.94e4
  • 1.94e4
  • 2.14e4
35.01
  • 35.01
  • 28.41
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.45
  • 32.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.03e4
  • 2.03e4
32.13
  • 32.13
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.62
  • 28.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000004931.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000004931.

Cross-references

EnsemblENSDARG00000004931 (slc8a3)
ZFINZDB-GENE-050810-1 (slc8a3)
EMBLCR354599, CR361558
Uniprot/SPTREMBLB8JHS8, B8JHS8_DANRE

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