D. rerio Gene: grna - ENSDARG00000004954 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000004954
Namegrna
Descriptiongranulin a [Source:ZFIN;Acc:ZDB-GENE-030131-8434]
OrganismDanio rerio (zebrafish)
Synonym(s)grn, pgrn-a, progranulin, wu:fb11g12, wu:fj18f05, zfpgrn-a
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
205
  • 205
99.32
  • 99.32
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
375
  • 375
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
567
  • 567
98.10
  • 98.10
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
657
  • 657
97.80
  • 97.80
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.49
  • 96.49
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.49
  • 96.49
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.23
  • 96.23
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.52e3
  • 1.52e3
  • 1.95e4
94.92
  • 94.92
  • 34.71
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.22
  • 93.22
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.47
  • 92.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.13e3
  • 3.13e3
  • 1.12e4
89.53
  • 89.53
  • 62.38
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.30e3
  • 3.30e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.95e3
  • 4.95e3
83.42
  • 83.42
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:00072334 cell stage
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 8.96e3
  • 8.96e3
  • 9.50e3
  • 9.51e3
  • 9.67e3
  • 1.38e4
  • 1.46e4
  • 1.64e4
  • 1.75e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
83.33
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 69.99
  • 69.99
  • 68.19
  • 68.17
  • 67.63
  • 53.85
  • 51.12
  • 44.92
  • 41.27
  • 40.59
  • 40.53
  • 40.53
  • 40.40
  • 40.36
  • 40.34
  • 40.01
  • 39.75
  • 39.40
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.62
  • 82.62
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000031Pharyngula:Prim-25
6.37e3
  • 6.37e3
  • 1.36e4
  • 1.49e4
  • 1.81e4
78.69
  • 78.69
  • 54.53
  • 50.00
  • 39.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000039Larval:Days 7-13
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
  • 9.52e3
  • 1.39e4
  • 1.63e4
  • 1.69e4
75.00
  • 75.00
  • 68.12
  • 53.31
  • 45.38
  • 43.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.50e3
  • 8.50e3
71.54
  • 71.54
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
8.68e3
  • 8.68e3
  • 1.14e4
  • 1.74e4
70.94
  • 70.94
  • 61.68
  • 41.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.28e4
  • 1.41e4
66.67
  • 66.67
  • 57.13
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000006ball
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:2000610vertical myoseptum
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.09e4
  • 1.09e4
  • 1.14e4
  • 1.42e4
  • 1.51e4
63.41
  • 63.41
  • 61.92
  • 52.35
  • 49.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000532CAP motoneuron
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:2000033intermediate cell mass of mesoderm
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.34e4
62.50
  • 62.50
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.03
  • 62.03
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.14e4
  • 1.14e4
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000024Segmentation:5-9 somites
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.12
  • 57.12
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.33e4
  • 1.33e4
  • 1.34e4
55.53
  • 55.53
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.36e4
55.24
  • 55.24
  • 54.53
AEIR
  • AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.47e4
  • 1.47e4
  • 1.71e4
  • 1.81e4
50.88
  • 50.88
  • 42.88
  • 39.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.86
  • 50.86
AEIR
  • AEIR
UBERON:0002200vasculature of head
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.63e4
  • 1.63e4
  • 1.75e4
  • 1.78e4
  • 1.79e4
  • 1.85e4
  • 1.87e4
  • 1.96e4
45.30
  • 45.30
  • 41.29
  • 40.27
  • 40.00
  • 37.91
  • 37.26
  • 34.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000004954.

Cross-references

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