D. rerio Gene: limk2 - ENSDARG00000005104 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000005104
Namelimk2
DescriptionLIM domain kinase 2 [Source:ZFIN;Acc:ZDB-GENE-040718-398]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fa97c09, wu:fk73e11, zgc:91990
Orthologs(s)19 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
571
  • 571
  • 1.14e3
98.09
  • 98.09
  • 96.19
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
889
  • 889
97.03
  • 97.03
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.97
  • 95.97
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.32e3
  • 1.32e3
  • 5.27e3
95.58
  • 95.58
  • 82.36
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.06
  • 95.06
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.83
  • 93.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.47e3
  • 2.47e3
  • 1.12e4
91.73
  • 91.73
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.49e3
  • 2.49e3
  • 4.86e3
  • 5.30e3
  • 5.85e3
  • 6.07e3
91.65
  • 91.65
  • 83.71
  • 82.26
  • 80.43
  • 79.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.60e3
  • 3.60e3
87.95
  • 87.95
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
3.71e3
  • 3.71e3
  • 5.70e3
  • 8.05e3
  • 8.22e3
  • 8.64e3
  • 8.79e3
87.57
  • 87.57
  • 80.91
  • 73.06
  • 72.47
  • 71.08
  • 70.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.07e3
  • 4.07e3
86.37
  • 86.37
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:00072322 cell stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.07e3
  • 4.07e3
  • 4.07e3
  • 4.87e3
  • 5.03e3
  • 6.04e3
  • 6.13e3
  • 6.26e3
  • 6.35e3
  • 6.36e3
  • 6.54e3
  • 6.87e3
  • 6.92e3
  • 6.99e3
  • 7.05e3
  • 7.48e3
  • 8.26e3
  • 1.42e4
  • 1.47e4
  • 1.49e4
86.36
  • 86.36
  • 86.36
  • 83.71
  • 83.17
  • 79.77
  • 79.49
  • 79.04
  • 78.75
  • 78.72
  • 78.09
  • 76.99
  • 76.81
  • 76.60
  • 76.40
  • 74.96
  • 72.34
  • 52.43
  • 50.90
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
4.10e3
  • 4.10e3
  • 5.18e3
  • 5.37e3
  • 5.55e3
  • 5.87e3
  • 6.33e3
  • 6.90e3
  • 7.03e3
  • 7.16e3
  • 7.94e3
86.29
  • 86.29
  • 82.65
  • 82.02
  • 81.43
  • 80.33
  • 78.81
  • 76.91
  • 76.47
  • 76.02
  • 73.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.22e3
  • 4.22e3
85.89
  • 85.89
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.25e3
  • 4.25e3
  • 5.86e3
85.78
  • 85.78
  • 80.39
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000036Larval:Day 4
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0001899epithalamus
  • ZFS:0000029Pharyngula:Prim-5
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
5.21e3
  • 5.21e3
  • 6.71e3
  • 6.95e3
82.56
  • 82.56
  • 77.54
  • 76.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
5.62e3
  • 5.62e3
  • 7.47e3
  • 1.19e4
81.19
  • 81.19
  • 75.00
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.23e3
  • 6.23e3
79.14
  • 79.14
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
6.28e3
  • 6.28e3
  • 6.66e3
  • 6.87e3
  • 7.37e3
78.97
  • 78.97
  • 77.69
  • 76.99
  • 75.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
6.82e3
  • 6.82e3
  • 1.12e4
  • 1.31e4
  • 1.37e4
77.18
  • 77.18
  • 62.50
  • 56.24
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.89e3
  • 6.89e3
  • 8.84e3
76.94
  • 76.94
  • 70.41
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.97e3
  • 6.97e3
  • 1.50e4
76.68
  • 76.68
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.64
  • 75.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.16
  • 75.16
AEIR
  • AEIR
UBERON:0010931intermandibularis
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 1.21e4
75.00
  • 75.00
  • 59.50
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.28e3
  • 8.28e3
72.27
  • 72.27
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.65e3
  • 8.65e3
71.04
  • 71.04
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.77e3
  • 8.77e3
70.63
  • 70.63
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.32e3
  • 9.32e3
68.78
  • 68.78
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.89
  • 66.89
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.20e4
66.67
  • 66.67
  • 59.98
AEIR
  • AEIR
  • AEIR
UBERON:0008229craniocervical region musculature
  • ZFS:0000036Larval:Day 4
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.12e4
66.66
  • 66.66
  • 62.50
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.71
  • 65.71
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
65.61
  • 65.61
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.08e4
  • 1.08e4
63.87
  • 63.87
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.10e4
  • 1.46e4
63.63
  • 63.63
  • 63.32
  • 51.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000036Larval:Day 4
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.20e4
  • 1.34e4
62.50
  • 62.50
  • 60.68
  • 59.98
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.14e4
  • 1.14e4
  • 1.49e4
61.88
  • 61.88
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.20e4
  • 1.20e4
  • 1.27e4
59.98
  • 59.98
  • 57.47
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.50
  • 59.50
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.23e4
  • 1.23e4
  • 1.49e4
58.80
  • 58.80
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.24e4
  • 1.24e4
  • 1.49e4
58.33
  • 58.33
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.31e4
  • 1.31e4
  • 1.38e4
56.23
  • 56.23
  • 53.83
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:2005010mid cerebral vein
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000959optic chiasma
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011683adductor mandibulae
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000016endocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000005104.

Cross-references

EnsemblENSDARG00000005104 (limk2)
ZFINZDB-GENE-040718-398 (limk2)
EMBLBC076525, BC165292, BX927203
Uniprot/SPTREMBLA2BIG1, A2BIG1_DANRE, Q6DG29, Q6DG29_DANRE

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