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D. rerio Gene: tenm3 - ENSDARG00000005479 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000005479
Nametenm3
Descriptionteneurin transmembrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-990714-19]
OrganismDanio rerio (zebrafish)
Synonym(s)a2bg15, cb399, id:ibd3379, id:ibd3379m, odd oz/ten-m homolog 3, odz3, seizure resistant s334, srs334, ten-3, ten-m3, tenascin-m3, zgc:153720, zgc:153720gn
Orthologs(s)28 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.37e3
  • 1.37e3
  • 6.23e3
  • 8.96e3
  • 9.39e3
  • 1.08e4
95.41
  • 95.41
  • 79.14
  • 69.98
  • 68.57
  • 63.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
2.26e3
  • 2.26e3
  • 3.80e3
  • 4.08e3
  • 4.54e3
  • 4.72e3
  • 5.08e3
  • 5.12e3
  • 6.41e3
  • 7.21e3
  • 1.16e4
92.45
  • 92.45
  • 87.27
  • 86.35
  • 84.80
  • 84.19
  • 82.98
  • 82.84
  • 78.52
  • 75.86
  • 61.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.09e3
  • 3.09e3
  • 5.48e3
  • 6.27e3
89.66
  • 89.66
  • 81.65
  • 79.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
3.21e3
  • 3.21e3
  • 5.23e3
  • 5.98e3
  • 6.23e3
  • 8.83e3
  • 9.34e3
  • 1.08e4
89.26
  • 89.26
  • 82.49
  • 79.99
  • 79.15
  • 70.44
  • 68.73
  • 63.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000039Larval:Days 7-13
  • UBERON:0000104life cycle
3.61e3
  • 3.61e3
  • 7.06e3
  • 1.34e4
  • 1.49e4
  • 1.49e4
87.92
  • 87.92
  • 76.37
  • 54.99
  • 50.00
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
4.14e3
  • 4.14e3
  • 5.79e3
  • 5.84e3
  • 6.32e3
  • 6.72e3
  • 6.73e3
  • 7.12e3
  • 8.00e3
  • 8.46e3
  • 1.21e4
86.15
  • 86.15
  • 80.61
  • 80.46
  • 78.83
  • 77.50
  • 77.48
  • 76.16
  • 73.22
  • 71.69
  • 59.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.83e3
  • 4.83e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
  • 5.98e3
  • 7.47e3
  • 9.25e3
  • 1.44e4
83.33
  • 83.33
  • 79.99
  • 74.99
  • 69.03
  • 51.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 5.50e3
  • 5.50e3
  • 7.08e3
  • 7.47e3
  • 7.47e3
  • 8.79e3
  • 1.37e4
  • 1.49e4
83.32
  • 83.32
  • 81.57
  • 81.57
  • 76.30
  • 74.99
  • 74.99
  • 70.57
  • 54.15
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.23e3
  • 5.23e3
  • 5.50e3
  • 5.50e3
82.49
  • 82.49
  • 81.57
  • 81.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.50e3
  • 5.50e3
  • 5.81e3
  • 6.85e3
81.57
  • 81.57
  • 80.55
  • 77.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.02
  • 80.02
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
6.29e3
  • 6.29e3
  • 7.15e3
  • 7.47e3
  • 8.45e3
  • 8.83e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
78.94
  • 78.94
  • 76.07
  • 74.98
  • 71.72
  • 70.44
  • 67.63
  • 66.65
  • 66.65
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005419pectoral appendage bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.40e3
  • 6.40e3
  • 7.47e3
  • 7.47e3
78.56
  • 78.56
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.64e3
  • 6.64e3
  • 7.03e3
  • 7.03e3
  • 8.40e3
  • 8.79e3
77.77
  • 77.77
  • 76.46
  • 76.46
  • 71.86
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 8.15e3
  • 8.83e3
  • 9.44e3
  • 9.67e3
77.49
  • 77.49
  • 77.49
  • 74.98
  • 72.71
  • 70.44
  • 68.40
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
  • 1.04e4
76.83
  • 76.83
  • 65.20
AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.03e3
  • 7.03e3
  • 7.03e3
  • 7.03e3
76.46
  • 76.46
  • 76.46
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.65e3
  • 8.65e3
74.99
  • 74.99
  • 74.99
  • 71.04
  • 71.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.83e3
  • 8.65e3
  • 8.65e3
  • 9.67e3
  • 9.67e3
74.99
  • 74.99
  • 74.99
  • 73.79
  • 71.04
  • 71.04
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.15e3
  • 8.15e3
  • 8.54e3
72.72
  • 72.72
  • 71.42
AEIR
  • AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.30e3
  • 8.30e3
  • 8.30e3
  • 8.96e3
72.21
  • 72.21
  • 72.21
  • 69.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.38e3
  • 8.38e3
71.95
  • 71.95
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
8.79e3
  • 8.79e3
  • 1.49e4
70.55
  • 70.55
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
8.83e3
  • 8.83e3
  • 8.96e3
  • 9.51e3
  • 1.24e4
70.44
  • 70.44
  • 69.98
  • 68.16
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
  • 1.16e4
69.28
  • 69.28
  • 61.09
AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.34e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
68.74
  • 68.74
  • 66.65
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 9.96e3
68.40
  • 68.40
  • 68.40
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
9.60e3
  • 9.60e3
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
9.67e3
  • 9.67e3
  • 1.75e4
67.61
  • 67.61
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.19e4
  • 1.25e4
  • 1.31e4
  • 1.34e4
66.65
  • 66.65
  • 60.00
  • 58.31
  • 56.23
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
  • 1.10e4
  • 1.28e4
64.28
  • 64.28
  • 63.32
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.36e4
  • 1.49e4
61.10
  • 61.10
  • 54.53
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.19e4
  • 1.19e4
  • 1.49e4
60.00
  • 60.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.51
  • 58.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.40
  • 58.40
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
1.24e4
  • 1.24e4
  • 1.28e4
58.33
  • 58.33
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.27
  • 58.27
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.05
  • 58.05
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.26e4
  • 1.26e4
  • 1.31e4
  • 1.32e4
  • 1.57e4
  • 1.60e4
57.89
  • 57.89
  • 56.11
  • 55.86
  • 47.54
  • 46.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
  • 1.41e4
56.23
  • 56.23
  • 52.92
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.36
  • 54.36
AEIR
  • AEIR
CL:0000561amacrine cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
48.99
  • 48.99
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.22
  • 48.22
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.55
  • 47.55
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.06
  • 46.06
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.75
  • 44.75
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.23
  • 41.23
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria23 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000005479.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Chordata5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000005479.

Cross-references

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