Gene: csnk1db - ENSDARG00000006125 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000006125
Name	csnk1db
Description	casein kinase 1, delta b [Source:ZFIN;Acc:ZDB-GENE-040426-2385]
Organism	Danio rerio (zebrafish)
Synonym(s)	csnk1d, q4v962, wu:fb69b03, wu:fj97a05, zgc:77627

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	314 314	98.95188 98.95188	AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	515 515	98.27881 98.27881	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 23 stages UBERON:0000106zygote stage ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000036Larval:Day 4 ZFS:0000022Gastrula:Bud ZFS:0000037Larval:Day 5 ZFS:0000019Gastrula:Shield ZFS:0000040Larval:Days 14-20 ZFS:0000042Juvenile:Days 30-44 ZFS:0000024Segmentation:5-9 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000033Hatching:Long-pec ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000028Segmentation:26+ somites ZFS:0000011Blastula:1k-cell ZFS:0000032Pharyngula:High-pec ZFS:0000031Pharyngula:Prim-25 ZFS:0000027Segmentation:20-25 somites ZFS:0000014Blastula:Sphere UBERON:0000066fully formed stage UBERON:0000068embryo stage UBERON:0000104life cycle	704 704 2.30e3 2.34e3 2.34e3 2.52e3 2.74e3 3.04e3 3.18e3 3.40e3 3.55e3 3.62e3 3.65e3 3.97e3 4.90e3 5.69e3 6.79e3 7.47e3 7.47e3 7.97e3 8.96e3 1.36e4 1.40e4 1.50e4	97.64511 97.64511 92.31440 92.18002 92.17446 91.55922 90.84084 89.82644 89.35743 88.62974 88.11161 87.88002 87.76673 86.72086 83.59816 80.94615 77.26769 74.99498 74.99330 73.32328 69.98828 54.61183 53.03493 49.91796	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000966	retina	[+] 4 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25	861 861 1.29e3 3.83e3 5.61e3	97.11961 97.11961 95.67019 87.17460 81.21930	AEIR AEIR AEIR AEIR AEIR
UBERON:0000307	blastula	[+] 5 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome ZFS:0000014Blastula:Sphere ZFS:0000009Blastula:256-cell ZFS:0000016Blastula:30%-epiboly	1.06e3 1.06e3 1.99e3 2.23e3 2.37e3 2.59e3	96.44878 96.44878 93.32448 92.54435 92.05063 91.31487	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007010	cleaving embryo	[+] 1 stage ZFS:0000005Cleavage:16-cell	1.25e3 1.25e3	95.82128 95.82128	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.27e3 1.27e3	95.75059 95.75059	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	1.30e3 1.30e3	95.63674 95.63674	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.38e3 1.38e3	95.39899 95.39899	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	1.65e3 1.65e3	94.46472 94.46472	AEIR AEIR
UBERON:0000922	embryo	[+] 10 stages ZFS:0000037Larval:Day 5 ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage ZFS:0000024Segmentation:5-9 somites ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000025Segmentation:10-13 somites ZFS:0000026Segmentation:14-19 somites ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25	1.68e3 1.68e3 2.73e3 2.87e3 3.32e3 3.33e3 3.66e3 4.23e3 4.91e3 4.97e3 5.21e3	94.38985 94.38985 90.87098 90.40485 88.89395 88.85467 87.74068 85.82410 83.57673 83.34638 82.56997	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 3 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage ZFS:0000035Larval:Protruding-mouth	1.69e3 1.69e3 2.23e3 3.43e3	94.35636 94.35636 92.54676 88.52222	AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.77e3 1.77e3	94.06071 94.06071	AEIR AEIR
UBERON:0000948	heart	[+] 3 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage ZFS:0000035Larval:Protruding-mouth	1.84e3 1.84e3 3.05e3 1.21e4	93.85105 93.85105 89.80467 59.59033	AEIR AEIR AEIR AEIR
UBERON:0004734	gastrula	[+] 6 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud UBERON:0000109gastrula stage ZFS:0000020Gastrula:75%-epiboly ZFS:0000021Gastrula:90%-epiboly ZFS:0000017Gastrula:50%-epiboly	1.89e3 1.89e3 2.01e3 2.21e3 2.50e3 2.86e3 2.97e3	93.68935 93.68935 93.27385 92.61501 91.64572 90.42404 90.07283	AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:4000164	caudal fin	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	1.91e3 1.91e3 3.39e3	93.62063 93.62063 88.63865	AEIR AEIR AEIR
UBERON:0000955	brain	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000031Pharyngula:Prim-25	1.98e3 1.98e3 3.72e3	93.37977 93.37977 87.55514	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	2.12e3 2.12e3	92.89757 92.89757	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	2.33e3 2.33e3	92.19435 92.19435	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	2.35e3 2.35e3	92.13408 92.13408	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	2.52e3 2.52e3	91.55142 91.55142	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	2.84e3 2.84e3	90.48923 90.48923	AEIR AEIR
UBERON:0002082	cardiac ventricle	[+] 1 stage UBERON:0000066fully formed stage	2.84e3 2.84e3	90.47865 90.47865	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	2.89e3 2.89e3	90.33999 90.33999	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	2.93e3 2.93e3	90.17865 90.17865	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	3.15e3 3.15e3	89.46897 89.46897	AEIR AEIR
UBERON:0002329	somite	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	3.67e3 3.67e3	87.70227 87.70227	AEIR AEIR
UBERON:0003059	presomitic mesoderm	[+] 1 stage ZFS:0000025Segmentation:10-13 somites	4.16e3 4.16e3	86.06791 86.06791	AEIR AEIR
UBERON:0009620	tail bud paraxial mesoderm	[+] 1 stage ZFS:0000027Segmentation:20-25 somites	4.32e3 4.32e3	85.53598 85.53598	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	6.85e3 6.85e3	77.06004 77.06004	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	9.34e3 9.34e3	68.72314 68.72314	AEIR AEIR
UBERON:0002328	notochord	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000026Segmentation:14-19 somites ZFS:0000023Segmentation:1-4 somites ZFS:0000024Segmentation:5-9 somites ZFS:0000025Segmentation:10-13 somites	1.05e4 1.05e4 1.37e4 1.42e4 1.43e4 1.43e4	64.99163 64.99163 53.96484 52.47152 52.24090 52.24090	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002037	cerebellum	[+] 2 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000031Pharyngula:Prim-25	1.25e4 1.25e4 1.31e4	58.31156 58.31156 56.22992	AEIR AEIR AEIR
UBERON:0001891	midbrain	[+] 3 stages ZFS:0000026Segmentation:14-19 somites ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5	1.28e4 1.28e4 1.32e4 1.34e4	57.11606 57.11606 55.86060 54.97321	AEIR AEIR AEIR AEIR
UBERON:0005425	presumptive neural retina	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.31e4 1.31e4	56.24164 56.24164	AEIR AEIR
UBERON:0001893	telencephalon	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites ZFS:0000031Pharyngula:Prim-25	1.31e4 1.31e4 1.34e4 1.42e4	56.21820 56.21820 55.23805 52.60480	AEIR AEIR AEIR AEIR
UBERON:0001894	diencephalon	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000026Segmentation:14-19 somites ZFS:0000031Pharyngula:Prim-25	1.31e4 1.31e4 1.33e4 1.36e4	56.21820 56.21820 55.53213 54.51532	AEIR AEIR AEIR AEIR
UBERON:0002028	hindbrain	[+] 2 stages ZFS:0000033Hatching:Long-pec ZFS:0000026Segmentation:14-19 somites	1.34e4 1.34e4 1.42e4	54.97321 54.97321 52.47152	AEIR AEIR AEIR
UBERON:0007135	neural keel	[+] 1 stage ZFS:0000022Gastrula:Bud	1.36e4 1.36e4	54.53206 54.53206	AEIR AEIR
UBERON:0003075	neural plate	[+] 1 stage ZFS:0000020Gastrula:75%-epiboly	1.38e4 1.38e4	53.82942 53.82942	AEIR AEIR
UBERON:0001943	midbrain tegmentum	[+] 1 stage ZFS:0000033Hatching:Long-pec	1.40e4 1.40e4	53.10324 53.10324	AEIR AEIR
UBERON:0001892	rhombomere	[+] 2 stages ZFS:0000031Pharyngula:Prim-25 ZFS:0000029Pharyngula:Prim-5	1.49e4 1.49e4 1.49e4	49.98828 49.98828 49.98493	AEIR AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

Affymetrix data: Bgee
EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

Affymetrix data: ArrayExpress, GEO
EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Cross-references

EMBL	BC063953, BC097045, EU127825
Ensembl	ENSDARG00000006125 (csnk1db)
Uniprot/SWISSPROT	KC1DB_DANRE, Q6P3K7
ZFIN	ZDB-GENE-040426-2385 (csnk1db)