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D. rerio Gene: slc18a3a - ENSDARG00000006356 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000006356
Nameslc18a3a
Descriptionsolute carrier family 18 (vesicular acetylcholine transporter), member 3a [Source:ZFIN;Acc:ZDB-GENE-060929-990]
OrganismDanio rerio (zebrafish)
Synonym(s)vacht-a, vachta, vesicular acetylcholine transporter a, zgc:153442
Orthologs(s)22 orthologs
Paralog(s)32 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
  • 1.46e4
85.51
  • 85.51
  • 51.07
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
5.99e3
  • 5.99e3
  • 6.28e3
  • 1.11e4
  • 1.12e4
  • 1.12e4
79.95
  • 79.95
  • 78.97
  • 62.89
  • 62.58
  • 62.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.04e3
  • 6.04e3
  • 7.71e3
79.76
  • 79.76
  • 74.17
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.38e3
  • 9.38e3
  • 1.19e4
68.61
  • 68.61
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
67.20
  • 67.20
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000037Larval:Day 5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.03
  • 41.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
39.96
  • 39.96
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.88e4
  • 1.88e4
37.12
  • 37.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.60
  • 23.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi12 species12 genesCompare expression
Bilateria19 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000006356.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000006356 (slc18a3a)
ZFINZDB-GENE-060929-990 (slc18a3a)
EMBLBC124354, BC165388, BX855592
Uniprot/SPTREMBLB2GS60, B2GS60_DANRE
Uniprot/SWISSPROTQ08C75, VACHA_DANRE

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