D. rerio Gene: si:ch211-251b21.1 - ENSDARG00000007275 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000007275
Namesi:ch211-251b21.1
Descriptionsi:ch211-251b21.1 [Source:ZFIN;Acc:ZDB-GENE-060809-5]
OrganismDanio rerio (zebrafish)
Synonym(s)grik-l, wu:fq25a07
Orthologs(s)3 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
313
  • 313
  • 819
98.95
  • 98.95
  • 97.26
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
387
  • 387
  • 1.06e3
  • 1.78e3
  • 2.41e3
  • 3.31e3
  • 3.60e3
  • 5.75e3
98.71
  • 98.71
  • 96.47
  • 94.03
  • 91.92
  • 88.91
  • 87.96
  • 80.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
505
  • 505
  • 721
  • 743
98.31
  • 98.31
  • 97.59
  • 97.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
523
  • 523
  • 598
  • 684
  • 1.21e3
  • 2.16e3
  • 2.69e3
  • 6.65e3
  • 1.21e4
  • 1.47e4
  • 1.47e4
98.25
  • 98.25
  • 98.00
  • 97.71
  • 95.95
  • 92.76
  • 91.00
  • 77.73
  • 59.51
  • 50.90
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
609
  • 609
  • 2.42e3
  • 5.04e3
  • 5.37e3
97.96
  • 97.96
  • 91.89
  • 83.12
  • 82.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
750
  • 750
  • 6.93e3
  • 1.29e4
97.49
  • 97.49
  • 76.81
  • 56.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
813
  • 813
97.28
  • 97.28
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
833
  • 833
97.21
  • 97.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.46
  • 96.46
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.30e3
  • 1.30e3
95.65
  • 95.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.18
  • 93.18
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.84e3
  • 2.84e3
90.50
  • 90.50
AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
3.73e3
  • 3.73e3
  • 4.48e3
  • 5.97e3
  • 8.96e3
87.50
  • 87.50
  • 85.00
  • 80.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.58
  • 83.58
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
  • 8.29e3
83.22
  • 83.22
  • 72.25
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
6.40e3
  • 6.40e3
  • 7.47e3
  • 8.96e3
  • 9.33e3
78.57
  • 78.57
  • 74.99
  • 69.99
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.33
  • 78.33
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.88e3
  • 7.88e3
73.62
  • 73.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.32e3
  • 9.32e3
68.80
  • 68.80
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
  • 1.35e4
68.37
  • 68.37
  • 54.67
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
64.26
  • 64.26
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.31
  • 62.31
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.42e4
57.14
  • 57.14
  • 52.57
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.64e4
  • 1.64e4
45.06
  • 45.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.57
  • 39.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.17
  • 32.17
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000007275.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000007275.

Cross-references

EnsemblENSDARG00000007275 (si:ch211-251b21.1)
ZFINZDB-GENE-060809-5 (si:ch211-251b21.1)
EMBLCU499311
Uniprot/SPTREMBLB8JLR6, B8JLR6_DANRE

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