D. rerio Gene: onecut1 - ENSDARG00000007982 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000007982
Nameonecut1
Descriptionone cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
OrganismDanio rerio (zebrafish)
Synonym(s)hnf-6, hnf6, oc1, onecut1l, zgc:65904, zgc:77450

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.78e3
  • 2.78e3
  • 2.96e3
  • 2.96e3
  • 5.29e3
  • 5.29e3
90.62332
  • 90.62332
  • 89.99831
  • 89.99831
  • 82.13780
  • 82.13780
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
2.93e3
  • 2.93e3
  • 6.07e3
  • 7.71e3
  • 1.07e4
  • 1.49e4
90.11647
  • 90.11647
  • 79.48051
  • 73.93068
  • 63.91266
  • 49.66001
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.70e3
  • 3.70e3
  • 4.11e3
  • 4.11e3
  • 4.35e3
  • 5.18e3
  • 7.89e3
  • 8.46e3
87.49663
  • 87.49663
  • 86.10603
  • 86.10603
  • 85.28903
  • 82.49154
  • 73.32320
  • 71.41842
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.90e3
  • 3.90e3
  • 4.11e3
  • 4.67e3
  • 4.94e3
  • 5.45e3
  • 8.22e3
  • 8.33e3
86.83704
  • 86.83704
  • 86.10603
  • 84.20378
  • 83.32320
  • 81.57051
  • 72.20871
  • 71.86318
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
4.23e3
  • 4.23e3
  • 4.44e3
  • 5.15e3
  • 5.92e3
  • 6.35e3
  • 8.14e3
  • 8.14e3
  • 8.57e3
  • 1.37e4
85.70754
  • 85.70754
  • 84.99322
  • 82.59855
  • 79.98986
  • 78.55454
  • 72.48478
  • 72.48478
  • 71.03743
  • 53.55284
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.93e3
  • 4.93e3
  • 5.79e3
  • 7.40e3
  • 7.40e3
83.32489
  • 83.32489
  • 80.42296
  • 74.98646
  • 74.98477
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.18e3
  • 5.18e3
  • 5.18e3
  • 5.55e3
  • 5.55e3
  • 6.06e3
  • 7.97e3
  • 9.51e3
  • 9.87e3
82.49154
  • 82.49154
  • 82.49154
  • 81.24324
  • 81.24324
  • 79.53364
  • 73.06846
  • 67.84530
  • 66.65314
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.18e3
  • 5.18e3
  • 5.18e3
  • 5.82e3
  • 6.06e3
  • 6.06e3
  • 7.84e3
  • 8.57e3
82.49154
  • 82.49154
  • 82.49154
  • 80.34195
  • 79.53364
  • 79.53364
  • 73.51758
  • 71.03743
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
  • 2.27e4
82.09626
  • 82.09626
  • 23.23864
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.45e3
  • 5.45e3
  • 5.55e3
  • 5.79e3
  • 6.44e3
  • 6.58e3
  • 6.73e3
  • 8.22e3
  • 8.71e3
81.57051
  • 81.57051
  • 81.23817
  • 80.42296
  • 78.24734
  • 77.76763
  • 77.25922
  • 72.20871
  • 70.57472
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
78.56468
  • 78.56468
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000026Segmentation:14-19 somites
7.40e3
  • 7.40e3
74.99660
  • 74.99660
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
7.40e3
  • 7.40e3
74.98646
  • 74.98646
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
64.28063
  • 64.28063
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.16e4
  • 1.34e4
  • 1.55e4
62.48309
  • 62.48309
  • 60.69907
  • 54.73317
  • 47.60346
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
59.99662
  • 59.99662
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.50169
  • 59.50169
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
59.35640
  • 59.35640
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000035Larval:Protruding-mouth
1.27e4
  • 1.27e4
57.13609
  • 57.13609
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
56.24156
  • 56.24156
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.82875
  • 52.82875
AEIR
  • AEIR
UBERON:0002110gall bladder
  • ZFS:0000037Larval:Day 5
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
41.71328
  • 41.71328
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.36853
  • 41.36853
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
38.84373
  • 38.84373
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
33.47304
  • 33.47304
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.11109
  • 33.11109
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
30.98917
  • 30.98917
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
27.67857
  • 27.67857
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC056601, BX908748
EnsemblENSDARG00000007982 (onecut1)
Uniprot/SPTREMBLQ6PHC9, Q6PHC9_DANRE
ZFINZDB-GENE-040426-1469 (onecut1)

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