D. rerio Gene: onecut1 - ENSDARG00000007982 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000007982
Nameonecut1
Descriptionone cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
OrganismDanio rerio (zebrafish)
Synonym(s)hnf-6, hnf6, oc1, onecut1l, zgc:65904, zgc:77450

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
2.80e3
  • 2.80e3
  • 2.99e3
  • 2.99e3
  • 5.34e3
  • 5.34e3
90.62331
  • 90.62331
  • 89.99833
  • 89.99833
  • 82.13783
  • 82.13783
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
2.93e3
  • 2.93e3
  • 6.07e3
  • 9.11e3
  • 1.07e4
  • 1.49e4
90.20802
  • 90.20802
  • 79.67050
  • 69.51304
  • 64.24646
  • 50.12584
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.73e3
  • 3.73e3
  • 4.15e3
  • 4.15e3
  • 4.39e3
  • 5.23e3
  • 7.97e3
  • 8.54e3
87.49663
  • 87.49663
  • 86.10608
  • 86.10608
  • 85.28909
  • 82.49161
  • 73.32328
  • 71.41851
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.93e3
  • 3.93e3
  • 4.15e3
  • 4.72e3
  • 4.98e3
  • 5.50e3
  • 8.30e3
  • 8.40e3
86.83709
  • 86.83709
  • 86.10608
  • 84.20383
  • 83.32328
  • 81.57057
  • 72.20882
  • 71.86328
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
4.27e3
  • 4.27e3
  • 4.48e3
  • 5.20e3
  • 5.98e3
  • 6.41e3
  • 8.22e3
  • 8.22e3
  • 8.65e3
  • 1.39e4
85.70760
  • 85.70760
  • 84.99330
  • 82.59863
  • 79.98995
  • 78.55470
  • 72.48491
  • 72.48491
  • 71.03757
  • 53.55303
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
4.98e3
  • 4.98e3
  • 5.85e3
  • 7.47e3
  • 7.47e3
  • 1.08e4
83.32495
  • 83.32495
  • 80.42307
  • 74.98661
  • 74.98493
  • 63.73117
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.23e3
  • 5.23e3
  • 5.23e3
  • 5.60e3
  • 5.60e3
  • 6.11e3
  • 8.04e3
  • 9.60e3
  • 9.96e3
82.49161
  • 82.49161
  • 82.49161
  • 81.24331
  • 81.24331
  • 79.53374
  • 73.06855
  • 67.84543
  • 66.65328
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.23e3
  • 5.23e3
  • 5.23e3
  • 5.87e3
  • 6.11e3
  • 6.11e3
  • 7.91e3
  • 8.65e3
82.49161
  • 82.49161
  • 82.49161
  • 80.34206
  • 79.53374
  • 79.53374
  • 73.51770
  • 71.03757
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
  • 2.27e4
82.26106
  • 82.26106
  • 23.94937
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
5.50e3
  • 5.50e3
  • 5.60e3
  • 5.85e3
  • 6.50e3
  • 6.64e3
  • 6.79e3
  • 8.30e3
  • 8.79e3
81.57057
  • 81.57057
  • 81.23829
  • 80.42307
  • 78.24746
  • 77.76774
  • 77.25932
  • 72.20882
  • 70.57483
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
5.77e3
  • 5.77e3
  • 9.02e3
  • 9.96e3
  • 1.26e4
  • 1.28e4
80.67029
  • 80.67029
  • 69.80380
  • 66.64993
  • 57.77450
  • 57.08395
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
6.40e3
  • 6.40e3
78.56475
  • 78.56475
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.51e3
  • 6.51e3
  • 8.60e3
78.20654
  • 78.20654
  • 71.21076
AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99665
  • 74.99665
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.98661
  • 74.98661
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.10e3
  • 9.10e3
  • 1.59e4
69.53555
  • 69.53555
  • 46.87684
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.01e4
  • 1.01e4
  • 1.23e4
66.26133
  • 66.26133
  • 58.81375
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
64.28068
  • 64.28068
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
  • 1.17e4
  • 1.35e4
  • 1.38e4
62.48324
  • 62.48324
  • 60.69923
  • 54.73345
  • 53.93182
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
59.99665
  • 59.99665
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.87660
  • 59.87660
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
1.21e4
  • 1.21e4
59.35660
  • 59.35660
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.13616
  • 57.13616
AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24164
  • 56.24164
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.33e4
  • 1.33e4
55.40776
  • 55.40776
AEIR
  • AEIR
UBERON:0002110gall bladder
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00167
  • 50.00167
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.95844
  • 47.95844
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.25296
  • 42.25296
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
41.91140
  • 41.91140
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
39.40997
  • 39.40997
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.08901
  • 34.08901
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.72997
  • 33.72997
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.42755
  • 33.42755
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.70093
  • 31.70093
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.33292
  • 30.33292
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC056601, BX908748
EnsemblENSDARG00000007982 (onecut1)
Uniprot/SPTREMBLQ6PHC9, Q6PHC9_DANRE
ZFINZDB-GENE-040426-1469 (onecut1)

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