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D. rerio Gene: RDH13 (1 to many) - ENSDARG00000008491 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000008491
NameRDH13 (1 to many)
Descriptionsi:ch211-107o10.3 [Source:ZFIN;Acc:ZDB-GENE-030131-4716]
OrganismDanio rerio (zebrafish)
Synonym(s)fd55e03, sdr7c3, wu:fd55e03
Paralog(s)37 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.05
  • 94.05
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.18
  • 90.18
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.50
  • 88.50
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
3.83e3
  • 3.83e3
  • 5.36e3
  • 1.23e4
  • 1.41e4
  • 1.46e4
  • 1.50e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.80e4
  • 1.81e4
87.16
  • 87.16
  • 82.06
  • 58.92
  • 52.63
  • 51.12
  • 49.92
  • 40.62
  • 40.56
  • 40.18
  • 39.85
  • 39.77
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.51e3
  • 4.51e3
  • 1.13e4
84.90
  • 84.90
  • 62.26
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.67
  • 83.67
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
5.41e3
  • 5.41e3
  • 1.55e4
  • 1.63e4
  • 1.64e4
  • 1.75e4
  • 1.78e4
  • 1.78e4
  • 1.80e4
  • 1.81e4
81.89
  • 81.89
  • 48.26
  • 45.40
  • 45.05
  • 41.29
  • 40.54
  • 40.40
  • 39.62
  • 39.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.40
  • 81.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.92
  • 80.92
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.27e3
  • 6.27e3
79.01
  • 79.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.34
  • 78.34
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
6.62e3
  • 6.62e3
  • 8.51e3
  • 1.17e4
77.83
  • 77.83
  • 71.50
  • 60.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.98e3
  • 6.98e3
  • 8.64e3
76.63
  • 76.63
  • 71.06
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
7.95e3
  • 7.95e3
  • 1.19e4
73.39
  • 73.39
  • 60.10
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.60e3
  • 8.60e3
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.06e4
  • 1.06e4
64.58
  • 64.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.27
  • 63.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
  • 1.48e4
  • 1.74e4
  • 1.77e4
61.22
  • 61.22
  • 50.55
  • 41.66
  • 40.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.30
  • 60.30
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.77
  • 59.77
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
  • 1.79e4
58.78
  • 58.78
  • 40.00
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.32e4
  • 1.32e4
55.83
  • 55.83
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
1.49e4
  • 1.49e4
  • 1.67e4
49.99
  • 49.99
  • 44.17
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.72e4
  • 1.72e4
  • 1.75e4
42.34
  • 42.34
  • 41.42
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria7 genesCompare expression
Opisthokonta16 genesCompare expression
Eukaryota37 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000008491.

Cross-references

EnsemblENSDARG00000008491 (RDH13 (1 to many))
HGNCHGNC:19978 (RDH13 (1 to many))
ZFINZDB-GENE-030131-4716 (si:ch211-107o10.3)
Uniprot/SPTREMBLA0A0J9YJH6, A0A0J9YJH6_DANRE, F1QCW3, F1QCW3_DANRE

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