D. rerio Gene: ctr9 - ENSDARG00000009170 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000009170
Namectr9
DescriptionCTR9 homolog, Paf1/RNA polymerase II complex component [Source:ZFIN;Acc:ZDB-GENE-030131-3782]
OrganismDanio rerio (zebrafish)
Synonym(s)fc54a06, wu:fc54a06
Orthologs(s)25 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.39e3
  • 1.39e3
  • 2.37e3
  • 4.55e3
  • 9.65e3
95.35
  • 95.35
  • 92.08
  • 84.78
  • 67.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
1.60e3
  • 1.60e3
  • 1.81e3
  • 1.95e3
  • 2.06e3
  • 2.79e3
  • 3.13e3
94.65
  • 94.65
  • 93.94
  • 93.46
  • 93.11
  • 90.67
  • 89.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.73e3
  • 1.73e3
94.19
  • 94.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.93e3
  • 1.93e3
93.54
  • 93.54
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
2.08e3
  • 2.08e3
  • 2.34e3
  • 2.50e3
  • 2.56e3
  • 3.32e3
  • 3.36e3
  • 3.41e3
  • 4.11e3
  • 4.18e3
  • 6.88e3
93.04
  • 93.04
  • 92.17
  • 91.63
  • 91.43
  • 88.88
  • 88.77
  • 88.60
  • 86.25
  • 86.00
  • 76.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
2.68e3
  • 2.68e3
  • 2.88e3
  • 3.34e3
  • 3.45e3
  • 3.50e3
  • 3.71e3
  • 4.00e3
  • 4.04e3
  • 4.68e3
  • 5.93e3
  • 6.06e3
  • 6.33e3
  • 6.37e3
  • 6.99e3
  • 1.45e4
  • 1.47e4
  • 1.49e4
  • 1.50e4
91.02
  • 91.02
  • 90.35
  • 88.81
  • 88.43
  • 88.30
  • 87.58
  • 86.60
  • 86.47
  • 84.34
  • 80.14
  • 79.70
  • 78.80
  • 78.66
  • 76.61
  • 51.56
  • 50.90
  • 49.95
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.75e3
  • 2.75e3
90.79
  • 90.79
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.04e3
  • 3.04e3
  • 3.09e3
  • 4.11e3
  • 5.80e3
  • 6.66e3
89.84
  • 89.84
  • 89.66
  • 86.26
  • 80.57
  • 77.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
  • 7.96e3
88.00
  • 88.00
  • 73.35
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.63e3
  • 3.63e3
87.85
  • 87.85
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.36e3
  • 4.36e3
85.40
  • 85.40
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.05
  • 84.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.04
  • 84.04
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.97
  • 83.97
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.11e3
  • 5.11e3
  • 7.50e3
82.88
  • 82.88
  • 74.89
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.20e3
  • 5.20e3
  • 1.04e4
82.59
  • 82.59
  • 65.08
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
5.22e3
  • 5.22e3
  • 6.10e3
  • 6.83e3
82.53
  • 82.53
  • 79.58
  • 77.14
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.69
  • 81.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.53e3
  • 5.53e3
81.50
  • 81.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.53e3
  • 5.53e3
  • 5.92e3
81.47
  • 81.47
  • 80.19
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.68e3
  • 5.68e3
80.97
  • 80.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.83e3
  • 5.83e3
80.48
  • 80.48
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.91e3
  • 5.91e3
80.21
  • 80.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.01e3
  • 6.01e3
79.88
  • 79.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.55e3
  • 6.55e3
78.08
  • 78.08
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.66e3
  • 6.66e3
77.71
  • 77.71
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.40
  • 65.40
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.56
  • 55.56
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000009170.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000009170.

Cross-references

EnsemblENSDARG00000009170 (ctr9)
ZFINZDB-GENE-030131-3782 (ctr9)
EMBLAB286670, CU467652
Uniprot/SPTREMBLA3KDM3, A3KDM3_DANRE

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