D. rerio Gene: rcvrn3 - ENSDARG00000009637 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000009637
Namercvrn3
Descriptionrecoverin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1661]
OrganismDanio rerio (zebrafish)
Synonym(s)rcv2b, zgc:73075
Orthologs(s)2 orthologs
Paralog(s)49 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
49.3
  • 49.3
  • 3.45e3
  • 1.47e4
99.84
  • 99.84
  • 88.44
  • 50.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
579
  • 579
  • 693
98.06
  • 98.06
  • 97.68
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
985
  • 985
  • 1.58e4
  • 1.73e4
  • 1.75e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.82e4
96.71
  • 96.71
  • 47.11
  • 42.15
  • 41.29
  • 40.40
  • 39.90
  • 39.66
  • 38.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.32e3
  • 1.32e3
  • 1.63e3
  • 7.68e3
95.57
  • 95.57
  • 94.54
  • 74.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
2.41e3
  • 2.41e3
  • 2.74e3
  • 4.55e3
  • 7.79e3
  • 1.50e4
  • 1.77e4
  • 1.78e4
  • 1.79e4
  • 1.80e4
  • 1.81e4
91.92
  • 91.92
  • 90.82
  • 84.78
  • 73.90
  • 49.92
  • 40.62
  • 40.56
  • 40.18
  • 39.85
  • 39.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.01
  • 56.01
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.50e4
55.82
  • 55.82
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.37e4
54.40
  • 54.40
  • 54.22
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000030Pharyngula:Prim-15
1.40e4
  • 1.40e4
53.10
  • 53.10
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.70
  • 52.70
AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.58e4
  • 1.58e4
  • 1.75e4
47.17
  • 47.17
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.11
  • 43.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.70e4
  • 1.70e4
  • 1.77e4
42.96
  • 42.96
  • 40.73
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.94e4
  • 1.94e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.52
  • 33.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000009637.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Bilateria3 genesCompare expression
Eukaryota49 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000009637.

Cross-references

EnsemblENSDARG00000009637 (rcvrn3)
ZFINZDB-GENE-040426-1661 (rcvrn3)
EMBLBX950195
Uniprot/SPTREMBLI3ITF4, I3ITF4_DANRE, Q1LUD3, Q1LUD3_DANRE

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