D. rerio Gene: myh11a - ENSDARG00000009782 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000009782
Namemyh11a
Descriptionmyosin, heavy chain 11a, smooth muscle [Source:ZFIN;Acc:ZDB-GENE-050531-1]
OrganismDanio rerio (zebrafish)
Synonym(s)meltdown, mlt, myh11, myh11 {eco:0000313|embl:aai62152.1,gn eco:0000313|zfin:zdb-gene-050531-1}, smmhc
Orthologs(s)25 orthologs
Paralog(s)50 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
632
  • 632
97.89
  • 97.89
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
696
  • 696
97.67
  • 97.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
802
  • 802
97.32
  • 97.32
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.28
  • 93.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.01
  • 89.01
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.97e3
  • 3.97e3
  • 1.83e4
86.72
  • 86.72
  • 38.73
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
4.20e3
  • 4.20e3
  • 5.46e3
  • 1.21e4
85.94
  • 85.94
  • 81.73
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
6.57e3
  • 6.57e3
  • 1.95e4
78.00
  • 78.00
  • 34.66
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.96
  • 77.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.74
  • 76.74
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.71e3
  • 7.71e3
74.18
  • 74.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
74.01
  • 74.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.37e3
  • 8.37e3
71.98
  • 71.98
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
8.53e3
  • 8.53e3
  • 9.33e3
  • 1.07e4
  • 1.31e4
71.43
  • 71.43
  • 68.74
  • 64.28
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.33
  • 66.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
  • 1.68e4
  • 1.84e4
  • 1.90e4
  • 2.16e4
58.35
  • 58.35
  • 43.75
  • 38.43
  • 36.27
  • 27.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e4
  • 1.45e4
51.36
  • 51.36
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.26
  • 51.26
AEIR
  • AEIR
CL:0000192smooth muscle cell
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.73e4
  • 1.73e4
41.98
  • 41.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000009782.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression
Bilateria5 genesCompare expression
Opisthokonta50 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000009782.

Cross-references

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