D. rerio Gene: pou3f1 - ENSDARG00000009823 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000009823
Namepou3f1
DescriptionPOU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
OrganismDanio rerio (zebrafish)
Synonym(s)a2bgw5, a7mck3, oct-6, oct6, pou50, q6nyy2, wu:fc09d06, zp-50, zp50, zp50pou

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
913
  • 913
96.95
  • 96.95
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
996
  • 996
  • 4.98e3
  • 5.27e3
  • 8.79e3
  • 8.96e3
  • 1.38e4
96.67
  • 96.67
  • 83.33
  • 82.35
  • 70.57
  • 69.99
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.10e3
  • 1.10e3
  • 2.26e3
  • 1.26e4
96.33
  • 96.33
  • 92.42
  • 57.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.18e3
  • 1.18e3
  • 1.37e3
  • 1.89e3
  • 2.37e3
  • 2.79e3
  • 2.95e3
  • 3.38e3
  • 7.08e3
  • 8.39e3
  • 1.00e4
96.05
  • 96.05
  • 95.41
  • 93.69
  • 92.07
  • 90.65
  • 90.11
  • 88.70
  • 76.31
  • 71.89
  • 66.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
1.58e3
  • 1.58e3
  • 2.09e3
  • 2.68e3
  • 3.32e3
  • 5.80e3
  • 7.14e3
  • 1.03e4
  • 1.11e4
  • 1.14e4
  • 1.16e4
  • 1.41e4
  • 1.42e4
  • 1.44e4
  • 1.44e4
  • 1.48e4
  • 1.49e4
94.72
  • 94.72
  • 93.01
  • 91.03
  • 88.87
  • 80.58
  • 76.10
  • 65.56
  • 62.94
  • 61.75
  • 61.09
  • 52.78
  • 52.39
  • 51.88
  • 51.82
  • 50.61
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
  • 1.78e4
93.28
  • 93.28
  • 40.35
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
2.13e3
  • 2.13e3
  • 4.15e3
  • 4.48e3
  • 5.60e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 1.08e4
  • 1.19e4
  • 1.34e4
92.86
  • 92.86
  • 86.11
  • 84.99
  • 81.25
  • 74.99
  • 73.52
  • 69.99
  • 63.87
  • 60.00
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000035Larval:Protruding-mouth
2.44e3
  • 2.44e3
  • 4.48e3
  • 5.43e3
  • 6.17e3
  • 8.96e3
  • 1.36e4
91.83
  • 91.83
  • 85.00
  • 81.81
  • 79.35
  • 70.00
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001016nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
2.49e3
  • 2.49e3
  • 2.99e3
  • 3.73e3
91.67
  • 91.67
  • 90.00
  • 87.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
2.99e3
  • 2.99e3
  • 4.27e3
  • 4.80e3
  • 5.97e3
  • 8.22e3
  • 9.10e3
  • 9.71e3
  • 1.20e4
  • 1.39e4
90.00
  • 90.00
  • 85.71
  • 83.92
  • 80.00
  • 72.48
  • 69.55
  • 67.48
  • 59.98
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.82e3
  • 3.82e3
  • 4.58e3
  • 4.67e3
87.20
  • 87.20
  • 84.68
  • 84.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
3.98e3
  • 3.98e3
  • 4.27e3
  • 7.08e3
  • 8.04e3
  • 8.54e3
  • 8.54e3
  • 1.05e4
86.66
  • 86.66
  • 85.71
  • 76.30
  • 73.07
  • 71.42
  • 71.42
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
5.60e3
  • 5.60e3
  • 8.65e3
  • 8.79e3
  • 9.13e3
  • 9.13e3
  • 1.37e4
81.25
  • 81.25
  • 71.04
  • 70.57
  • 69.43
  • 69.43
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
5.81e3
  • 5.81e3
  • 6.50e3
  • 7.47e3
  • 9.51e3
  • 9.67e3
  • 9.75e3
80.55
  • 80.55
  • 78.25
  • 74.98
  • 68.16
  • 67.63
  • 67.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.24
  • 80.24
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
5.97e3
  • 5.97e3
  • 6.64e3
  • 1.40e4
  • 1.49e4
80.00
  • 80.00
  • 77.77
  • 53.10
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.85e3
  • 6.85e3
  • 8.65e3
  • 1.24e4
  • 1.42e4
  • 1.42e4
77.07
  • 77.07
  • 71.04
  • 58.33
  • 52.60
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005499rhombomere 1
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:2000175posterior lateral line nerve
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 9.51e3
  • 9.96e3
  • 1.09e4
  • 1.33e4
75.00
  • 75.00
  • 68.17
  • 66.66
  • 63.63
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.74e3
  • 7.74e3
74.07
  • 74.07
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 1.08e4
  • 1.10e4
71.42
  • 71.42
  • 63.87
  • 63.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
8.54e3
  • 8.54e3
  • 9.51e3
71.41
  • 71.41
  • 68.16
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000031Pharyngula:Prim-25
8.83e3
  • 8.83e3
70.44
  • 70.44
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
8.96e3
  • 8.96e3
  • 1.34e4
69.99
  • 69.99
  • 55.16
AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
9.19e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
69.22
  • 69.22
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007290presumptive rhombomere 3
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.05e4
  • 1.05e4
  • 1.18e4
  • 1.38e4
  • 1.44e4
  • 1.54e4
64.92
  • 64.92
  • 60.64
  • 53.91
  • 51.70
  • 48.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000016Blastula:30%-epiboly
1.08e4
  • 1.08e4
  • 1.33e4
63.87
  • 63.87
  • 55.55
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0007292presumptive rhombomere 5
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.46
  • 62.46
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.22e4
  • 1.22e4
  • 1.34e4
  • 1.39e4
59.08
  • 59.08
  • 54.99
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • UBERON:0000068embryo stage
1.25e4
  • 1.25e4
58.26
  • 58.26
AEIR
  • AEIR
UBERON:0005515rhombomere 5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.49e4
  • 1.49e4
57.14
  • 57.14
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
56.16
  • 56.16
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.34
  • 50.34
AEIR
  • AEIR
UBERON:0009841upper rhombic lip
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0001339nucleus of the tract of the anterior commissure (Danio)
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007289presumptive rhombomere 1
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001900ventral thalamus
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005523rhombomere 7
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005507rhombomere 3
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.02
  • 48.02
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.01
  • 42.01
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.04
  • 34.04
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
30.98
  • 30.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again