D. rerio Gene: vim - ENSDARG00000010008 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000010008
Namevim
Descriptionvimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
OrganismDanio rerio (zebrafish)
Synonym(s)cb28
Orthologs(s)18 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
971
  • 971
  • 1.45e3
  • 1.72e3
  • 1.78e3
  • 1.91e3
  • 2.43e3
  • 3.56e3
  • 3.93e3
  • 5.87e3
  • 6.91e3
  • 1.05e4
  • 1.08e4
  • 1.12e4
  • 1.29e4
  • 1.33e4
  • 1.45e4
  • 1.46e4
96.75
  • 96.75
  • 95.14
  • 94.26
  • 94.05
  • 93.60
  • 91.88
  • 88.10
  • 86.85
  • 80.36
  • 76.85
  • 64.76
  • 63.95
  • 62.39
  • 56.81
  • 55.37
  • 51.42
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.34e3
  • 1.34e3
  • 1.80e3
  • 2.31e3
95.50
  • 95.50
  • 93.98
  • 92.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.38e3
  • 1.38e3
  • 3.52e3
95.37
  • 95.37
  • 88.21
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.36
  • 95.36
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
  • 1.51e3
95.26
  • 95.26
  • 94.96
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.58e3
  • 1.58e3
  • 1.69e3
  • 1.72e3
  • 1.95e3
  • 2.09e3
  • 2.13e3
  • 2.48e3
  • 4.43e3
  • 8.06e3
  • 1.05e4
94.70
  • 94.70
  • 94.33
  • 94.25
  • 93.46
  • 93.01
  • 92.87
  • 91.71
  • 85.17
  • 73.00
  • 64.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.86e3
  • 1.86e3
93.79
  • 93.79
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
  • 4.90e3
91.80
  • 91.80
  • 83.61
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.48e3
  • 2.48e3
  • 8.35e3
91.70
  • 91.70
  • 72.05
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.98e3
  • 2.98e3
90.01
  • 90.01
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.74
  • 89.74
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.79e3
  • 3.79e3
87.33
  • 87.33
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.13e3
  • 5.13e3
82.81
  • 82.81
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.18e3
  • 5.18e3
82.65
  • 82.65
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
6.21e3
  • 6.21e3
  • 7.28e3
  • 7.72e3
  • 1.20e4
79.22
  • 79.22
  • 75.64
  • 74.16
  • 59.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
7.12e3
  • 7.12e3
  • 8.30e3
  • 8.40e3
  • 8.96e3
  • 9.13e3
  • 1.10e4
  • 1.14e4
  • 1.17e4
76.18
  • 76.18
  • 72.21
  • 71.86
  • 69.98
  • 69.43
  • 63.32
  • 61.75
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.83
  • 75.83
AEIR
  • AEIR
CL:0000530primary neuron
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
75.00
  • 75.00
  • 75.00
  • 75.00
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
74.99
  • 74.99
  • 73.07
  • 73.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 8.53e3
  • 8.53e3
  • 8.53e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
74.99
  • 74.99
  • 71.43
  • 71.43
  • 71.43
  • 70.82
  • 69.99
  • 69.99
  • 62.49
  • 60.70
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.58e3
  • 7.58e3
74.62
  • 74.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
7.99e3
  • 7.99e3
  • 1.32e4
  • 1.33e4
  • 1.44e4
  • 1.50e4
73.26
  • 73.26
  • 55.68
  • 55.31
  • 51.62
  • 49.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.10e3
  • 8.10e3
72.89
  • 72.89
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.22e3
  • 8.22e3
  • 8.96e3
  • 9.07e3
  • 9.25e3
  • 1.05e4
  • 1.17e4
  • 1.20e4
  • 1.26e4
72.48
  • 72.48
  • 69.98
  • 69.62
  • 69.03
  • 64.98
  • 60.84
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
8.54e3
  • 8.54e3
  • 9.71e3
  • 9.71e3
  • 1.02e4
  • 1.18e4
  • 1.22e4
  • 1.23e4
71.41
  • 71.41
  • 67.48
  • 67.48
  • 65.89
  • 60.50
  • 59.06
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.71e3
  • 8.71e3
  • 8.96e3
  • 9.51e3
  • 1.05e4
  • 1.16e4
  • 1.28e4
  • 1.31e4
70.82
  • 70.82
  • 69.99
  • 68.17
  • 64.99
  • 61.10
  • 57.14
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.79e3
  • 8.79e3
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
70.57
  • 70.57
  • 61.88
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
8.96e3
  • 8.96e3
  • 1.12e4
69.99
  • 69.99
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 9.10e3
  • 9.71e3
  • 9.71e3
69.98
  • 69.98
  • 69.55
  • 67.48
  • 67.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
9.34e3
  • 9.34e3
  • 9.44e3
  • 9.75e3
68.73
  • 68.73
  • 68.40
  • 67.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
9.38e3
  • 9.38e3
68.58
  • 68.58
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 9.96e3
68.40
  • 68.40
  • 68.40
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.54e3
  • 9.54e3
68.05
  • 68.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.83
  • 65.83
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.09e4
64.98
  • 64.98
  • 64.98
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.10e4
  • 1.10e4
  • 1.34e4
63.11
  • 63.11
  • 55.16
AEIR
  • AEIR
  • AEIR
UBERON:2000120lateral line ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
  • 1.26e4
  • 1.28e4
  • 1.36e4
61.10
  • 61.10
  • 57.68
  • 57.13
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.00
  • 57.00
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
53.31
  • 53.31
  • 49.98
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.69
  • 48.69
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.61
  • 47.61
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.55
  • 47.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
1.59e4
  • 1.59e4
46.79
  • 46.79
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000010008.

Cross-references

EnsemblENSDARG00000010008 (vim)
ZFINZDB-GENE-011212-3 (vim)
EMBLFP340248
Uniprot/SPTREMBLF1QAM8, F1QAM8_DANRE

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