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D. rerio Gene: slc1a6 - ENSDARG00000010096 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000010096
Nameslc1a6
Descriptionsolute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 [Source:ZFIN;Acc:ZDB-GENE-071004-45]
OrganismDanio rerio (zebrafish)
Synonym(s)eaat1c, eaat4, glastc, zgc:171923
Paralog(s)11 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
  • 1.69e4
  • 1.87e4
66.48
  • 66.48
  • 43.47
  • 37.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
  • 1.19e4
61.53
  • 61.53
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.74e4
55.71
  • 55.71
  • 41.79
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.64e4
  • 1.64e4
  • 2.10e4
44.95
  • 44.95
  • 29.84
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Cross-references

EnsemblENSDARG00000010096 (slc1a6)
ZFINZDB-GENE-071004-45 (slc1a6)
EMBLBX248501, HM138697
Uniprot/SPTREMBLD7RVS3, D7RVS3_DANRE

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