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D. rerio Gene: foxn4 - ENSDARG00000010591 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000010591
Namefoxn4
Descriptionforkhead box N4 [Source:ZFIN;Acc:ZDB-GENE-990415-277]
OrganismDanio rerio (zebrafish)
Synonym(s)q8uvh2, q90x68, q9dg30, q9pt94, sli, slipjig, whn, whna, winged helix nude
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
707
  • 707
97.64
  • 97.64
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.38e3
  • 1.38e3
  • 1.29e4
95.40
  • 95.40
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000030Pharyngula:Prim-15
3.26e3
  • 3.26e3
  • 4.19e3
  • 7.20e3
  • 7.47e3
  • 1.30e4
89.07
  • 89.07
  • 85.98
  • 75.90
  • 75.00
  • 56.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
4.16e3
  • 4.16e3
  • 6.41e3
  • 8.62e3
  • 9.99e3
  • 1.02e4
  • 1.16e4
  • 1.25e4
  • 1.78e4
86.07
  • 86.07
  • 78.53
  • 71.14
  • 66.55
  • 65.78
  • 61.19
  • 58.10
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
  • 2.13e4
80.26
  • 80.26
  • 28.79
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
7.11e3
  • 7.11e3
  • 9.48e3
  • 1.35e4
  • 1.43e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
  • 1.70e4
  • 1.78e4
  • 1.78e4
  • 1.80e4
76.19
  • 76.19
  • 68.27
  • 54.74
  • 52.03
  • 51.88
  • 50.25
  • 49.80
  • 43.02
  • 40.40
  • 40.38
  • 39.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.60e3
  • 7.60e3
74.55
  • 74.55
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0002087atrioventricular canal
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
  • 1.16e4
64.28
  • 64.28
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
  • 1.26e4
  • 1.39e4
60.09
  • 60.09
  • 57.80
  • 53.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
  • 1.25e4
  • 1.31e4
  • 1.34e4
60.00
  • 60.00
  • 58.31
  • 56.23
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.36e4
  • 1.69e4
56.55
  • 56.55
  • 54.53
  • 43.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005425presumptive neural retina
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
  • 1.49e4
56.24
  • 56.24
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.95
  • 55.95
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
1.32e4
  • 1.32e4
55.86
  • 55.86
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0003050olfactory placode
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
  • 1.41e4
54.97
  • 54.97
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
1.41e4
  • 1.41e4
52.92
  • 52.92
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000039Larval:Days 7-13
1.41e4
  • 1.41e4
  • 1.49e4
52.75
  • 52.75
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001908optic tract
  • ZFS:0000043Juvenile:Days 45-89
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007279presumptive atrioventricular canal
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000080mesonephros
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
49.92
  • 49.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.53e4
  • 1.53e4
  • 1.75e4
48.92
  • 48.92
  • 41.43
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
42.25
  • 42.25
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.02e4
  • 2.02e4
32.21
  • 32.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.37e4
  • 2.37e4
20.75
  • 20.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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