Gene: acsl4b - ENSDARG00000010752 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000010752
Name	acsl4b
Description	acyl-CoA synthetase long-chain family member 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6493]
Organism	Danio rerio (zebrafish)
Synonym(s)	acsl4l, si:dkeyp-20g2.4, wu:fl49b07
Orthologs(s)	9 orthologs
Paralog(s)	11 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.55e3 2.55e3	91.45 91.45	AEIR AEIR
UBERON:0000307	blastula	[+] 2 stages ZFS:0000015Blastula:Dome ZFS:0000011Blastula:1k-cell	2.89e3 2.89e3 3.84e3	90.34 90.34 87.13	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	3.36e3 3.36e3	88.75 88.75	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	3.59e3 3.59e3	87.98 87.98	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	3.67e3 3.67e3 1.61e4	87.70 87.70 45.98	AEIR AEIR AEIR
UBERON:0003982	mature ovarian follicle	[+] 1 stage UBERON:0000066fully formed stage	4.17e3 4.17e3	86.06 86.06	AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.33e3 4.33e3	85.51 85.51	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	4.54e3 4.54e3	84.79 84.79	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.88e3 4.88e3	83.66 83.66	AEIR AEIR
UBERON:0004734	gastrula	[+] 2 stages ZFS:0000019Gastrula:Shield ZFS:0000022Gastrula:Bud	5.44e3 5.44e3 1.24e4	81.80 81.80 58.36	AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	6.15e3 6.15e3	79.41 79.41	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	7.00e3 7.00e3	76.57 76.57	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	7.58e3 7.58e3 9.83e3 1.05e4 1.35e4 1.39e4	74.61 74.61 67.07 64.97 54.81 53.42	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	8.20e3 8.20e3 1.28e4	72.55 72.55 57.06	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	9.10e3 9.10e3	69.54 69.54	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.62 65.62	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 5 stages ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage UBERON:0000104life cycle UBERON:0000068embryo stage	1.07e4 1.07e4 1.28e4 1.46e4 1.47e4 1.49e4	64.27 64.27 57.18 51.12 50.90 50.20	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.19e4 1.19e4	60.31 60.31	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.25e4 1.25e4 1.34e4	58.18 58.18 55.26	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	1.28e4 1.28e4	57.04 57.04	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.33e4 1.33e4	55.30 55.30	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	1.35e4 1.35e4	54.94 54.94	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.50e4 1.50e4	49.85 49.85	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.52e4 1.52e4	49.15 49.15	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	7 species Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	9 genes FBgn0263120 Acsl WBGene00016716 acs-17 WBGene00018152 acs-4 FBgn0089410 GF12373 FBgn0141544 GI18805 FBgn0182359 GD10588 FBgn0205822 GJ18668 FBgn0208951 GJ21833 FBgn0236574 GE19217	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000010752.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Deuterostomia	3 genes ENSDARG00000004078 acsl4a ENSDARG00000014674 acsl3b ENSDARG00000032079 acsl3a	Compare expression	[+]
Opisthokonta	7 genes ENSDARG00000003854 acsl1b ENSDARG00000004078 acsl4a ENSDARG00000014674 acsl3b ENSDARG00000030514 acsl1a ENSDARG00000032079 acsl3a ENSDARG00000075931 acsl5 ENSDARG00000078399 FO704819.2	Compare expression	[+]
Eukaryota	11 genes ENSDARG00000003854 acsl1b ENSDARG00000004078 acsl4a ENSDARG00000004094 acsbg2 ENSDARG00000014674 acsl3b ENSDARG00000030514 acsl1a ENSDARG00000032079 acsl3a ENSDARG00000059503 ACSF3 ENSDARG00000061201 acsf2 ENSDARG00000062077 acsbg1 ENSDARG00000075931 acsl5 ENSDARG00000078399 FO704819.2	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000010752.

Cross-references

Ensembl	ENSDARG00000010752 (acsl4b)
ZFIN	ZDB-GENE-030131-6493 (acsl4b)
EMBL	CR926467
Uniprot/SPTREMBL	A5WV16, A5WV16_DANRE