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D. rerio Gene: trmt1 - ENSDARG00000010978 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000010978
Nametrmt1
DescriptiontRNA methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060810-40]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7150454
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.69e3
  • 3.69e3
  • 4.77e3
  • 5.62e3
  • 6.29e3
  • 6.30e3
87.64
  • 87.64
  • 84.04
  • 81.18
  • 78.94
  • 78.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.57
  • 87.57
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.97e3
  • 3.97e3
86.71
  • 86.71
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.00e3
  • 4.00e3
86.62
  • 86.62
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
4.72e3
  • 4.72e3
  • 5.98e3
  • 6.98e3
  • 8.88e3
  • 9.55e3
  • 9.82e3
84.21
  • 84.21
  • 79.96
  • 76.61
  • 70.25
  • 68.01
  • 67.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
4.82e3
  • 4.82e3
  • 1.35e4
  • 1.36e4
83.85
  • 83.85
  • 54.73
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
5.41e3
  • 5.41e3
  • 6.38e3
  • 7.34e3
  • 8.76e3
  • 9.44e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
  • 1.11e4
  • 1.14e4
  • 1.18e4
  • 1.32e4
  • 1.39e4
  • 1.40e4
81.89
  • 81.89
  • 78.65
  • 75.44
  • 70.66
  • 68.38
  • 65.99
  • 64.98
  • 64.75
  • 64.69
  • 62.81
  • 61.82
  • 60.47
  • 55.76
  • 53.31
  • 53.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.65e3
  • 5.65e3
81.07
  • 81.07
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.16e3
  • 6.16e3
  • 6.61e3
  • 7.61e3
  • 7.98e3
  • 8.03e3
  • 9.69e3
  • 1.22e4
  • 1.26e4
  • 1.39e4
  • 1.45e4
79.38
  • 79.38
  • 77.87
  • 74.52
  • 73.28
  • 73.11
  • 67.57
  • 59.02
  • 57.81
  • 53.47
  • 51.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.75
  • 77.75
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.70e3
  • 6.70e3
77.56
  • 77.56
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.96
  • 75.96
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.02
  • 73.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
69.02
  • 69.02
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.40e3
  • 9.40e3
68.53
  • 68.53
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.58e3
  • 9.58e3
  • 9.93e3
67.92
  • 67.92
  • 66.74
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.68e3
  • 9.68e3
  • 1.11e4
  • 1.24e4
  • 1.30e4
67.58
  • 67.58
  • 62.74
  • 58.34
  • 56.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.41
  • 67.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.06e4
  • 1.06e4
  • 1.33e4
64.47
  • 64.47
  • 55.42
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.09
  • 64.09
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.09e4
  • 1.09e4
  • 1.37e4
63.65
  • 63.65
  • 54.23
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.55
  • 62.55
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.93
  • 61.93
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.16e4
  • 1.16e4
  • 1.21e4
  • 1.25e4
  • 1.27e4
  • 1.28e4
  • 1.32e4
61.09
  • 61.09
  • 59.36
  • 58.31
  • 57.47
  • 57.12
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.98
  • 60.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.33e4
58.85
  • 58.85
  • 55.52
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.37
  • 58.37
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.26e4
  • 1.26e4
  • 1.28e4
  • 1.32e4
  • 1.33e4
57.87
  • 57.87
  • 57.12
  • 55.86
  • 55.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.28e4
  • 1.28e4
  • 1.40e4
  • 1.48e4
57.05
  • 57.05
  • 53.24
  • 50.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.43
  • 55.43
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.51
  • 54.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSDARG00000010978.

Cross-references

EnsemblENSDARG00000010978 (trmt1)
ZFINZDB-GENE-060810-40 (trmt1)
EMBLCR847925
Uniprot/SPTREMBLF1QGD9, F1QGD9_DANRE

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