D. rerio Gene: trmt1 - ENSDARG00000010978 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000010978
Nametrmt1
DescriptiontRNA methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-060810-40]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.94e3
  • 3.94e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
4.79e3
  • 4.79e3
  • 1.34e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
5.37e3
  • 5.37e3
  • 6.33e3
  • 7.28e3
  • 8.70e3
  • 9.38e3
  • 1.01e4
  • 1.04e4
  • 1.05e4
  • 1.10e4
  • 1.13e4
  • 1.17e4
  • 1.31e4
  • 1.38e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
5.58e3
  • 5.58e3
  • 6.25e3
  • 6.26e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.61e3
  • 5.61e3
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
5.94e3
  • 5.94e3
  • 7.60e3
  • 8.82e3
  • 9.49e3
  • 9.75e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.11e3
  • 6.11e3
  • 6.56e3
  • 7.56e3
  • 7.79e3
  • 8.02e3
  • 9.69e3
  • 1.22e4
  • 1.25e4
  • 1.39e4
  • 1.45e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.66e3
  • 6.66e3
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.84e3
  • 6.84e3
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.25e3
  • 9.25e3
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.61e3
  • 9.61e3
  • 1.10e4
  • 1.24e4
  • 1.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
1.15e4
  • 1.15e4
  • 1.20e4
  • 1.23e4
  • 1.26e4
  • 1.27e4
  • 1.31e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.23e4
  • 1.23e4
  • 1.36e4
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
1.25e4
  • 1.25e4
  • 1.27e4
  • 1.31e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.35e4
  • 1.35e4
  • 1.39e4
  • 1.70e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data: