D. rerio Gene: pdlim3a - ENSDARG00000011023 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011023
Namepdlim3a
DescriptionPDZ and LIM domain 3a [Source:ZFIN;Acc:ZDB-GENE-050505-1]
OrganismDanio rerio (zebrafish)
Synonym(s)alp-like, pdlim3, zgc:110415

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:00072334 cell stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000104life cycle
5.05e3
  • 5.05e3
  • 8.22e3
  • 9.42e3
  • 9.42e3
  • 1.16e4
  • 1.21e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.37e3
  • 9.37e3
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000036Larval:Day 4
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.27e4
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
  • 1.30e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
1.35e4
  • 1.35e4
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
AEIR
  • AEIR
UBERON:0002285telencephalic ventricle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:2005010mid cerebral vein
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000959optic chiasma
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0004363pharyngeal arch artery
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0011648jaw muscle
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000016endocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.95e4
  • 1.95e4
  • 2.57e4
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR759951
EnsemblENSDARG00000011023 (pdlim3a)
Uniprot/SPTREMBLB8JIG6, B8JIG6_DANRE
ZFINZDB-GENE-050505-1 (pdlim3a)

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