D. rerio Gene: pgbd5 - ENSDARG00000011042 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011042
Namepgbd5
DescriptionpiggyBac transposable element derived 5 [Source:ZFIN;Acc:ZDB-GENE-040724-229]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-8a9.3, zc8a9.3
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.78e3
  • 1.78e3
94.05
  • 94.05
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.63
  • 75.63
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.73
  • 69.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.08e4
  • 1.08e4
63.90
  • 63.90
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.38e4
  • 1.38e4
  • 1.61e4
53.72
  • 53.72
  • 46.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
  • 1.61e4
52.83
  • 52.83
  • 45.97
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.56
  • 49.56
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.51e4
  • 1.51e4
  • 1.63e4
  • 2.02e4
  • 2.02e4
49.31
  • 49.31
  • 45.48
  • 32.51
  • 32.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.62e4
  • 1.62e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.72e4
  • 1.72e4
  • 1.88e4
42.37
  • 42.37
  • 37.08
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.13
  • 39.13
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.78
  • 37.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.17
  • 35.17
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.70
  • 33.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
33.09
  • 33.09
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.02
  • 27.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000011042 (pgbd5)
ZFINZDB-GENE-040724-229 (pgbd5)
EMBLAL772289, CT573145
Uniprot/SPTREMBLQ6ZM83, Q6ZM83_DANRE

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