D. rerio Gene: sema3fa - ENSDARG00000011163 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011163
Namesema3fa
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
OrganismDanio rerio (zebrafish)
Synonym(s)sema3f1, wu:fb92d12

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
6.60e3
  • 6.60e3
  • 7.75e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
7.15e3
  • 7.15e3
  • 8.05e3
  • 9.01e3
  • 9.04e3
  • 9.33e3
  • 9.45e3
  • 1.32e4
  • 1.44e4
  • 1.51e4
  • 1.52e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
7.40e3
  • 7.40e3
  • 1.32e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.96e3
  • 7.96e3
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
8.19e3
  • 8.19e3
  • 1.10e4
  • 1.16e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
8.24e3
  • 8.24e3
  • 9.89e3
  • 9.95e3
  • 1.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.22e3
  • 9.22e3
  • 9.98e3
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
9.55e3
  • 9.55e3
  • 1.35e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000034Hatching:Pec-fin
1.16e4
  • 1.16e4
  • 1.18e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.35e4
  • 1.37e4
  • 1.39e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
1.25e4
  • 1.25e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.35e4
  • 1.37e4
  • 1.37e4
  • 1.40e4
  • 1.46e4
  • 1.47e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000034Hatching:Pec-fin
1.27e4
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.37e4
  • 1.37e4
  • 1.62e4
  • 1.74e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.38e4
  • 1.38e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
1.40e4
  • 1.40e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX950172
EnsemblENSDARG00000011163 (sema3fa)
Uniprot/SPTREMBLF1QPG9, F1QPG9_DANRE
ZFINZDB-GENE-050513-1 (sema3fa)

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