D. rerio Gene: otx2 - ENSDARG00000011235 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011235
Nameotx2
Descriptionorthodenticle homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-980526-406]
OrganismDanio rerio (zebrafish)
Synonym(s)etid309955.17, id:ibd2915, zgc:136535, zotx-2, zotx2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
395
  • 395
  • 431
  • 7.32e3
  • 1.11e4
  • 1.16e4
  • 1.38e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000033Hatching:Long-pec
740
  • 740
  • 5.92e3
  • 6.34e3
  • 9.05e3
  • 1.11e4
  • 1.13e4
  • 1.18e4
  • 1.23e4
  • 1.28e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
  • 1.26e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.34e3
  • 1.34e3
  • 2.71e3
  • 2.72e3
  • 3.49e3
  • 3.68e3
  • 4.64e3
  • 4.83e3
  • 5.80e3
  • 5.84e3
  • 7.52e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
1.43e3
  • 1.43e3
  • 1.55e3
  • 1.64e3
  • 1.80e3
  • 1.96e3
  • 2.18e3
  • 3.47e3
  • 3.64e3
  • 5.05e3
  • 5.86e3
  • 6.30e3
  • 6.75e3
  • 1.01e4
  • 1.47e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
1.64e3
  • 1.64e3
  • 2.47e3
  • 2.47e3
  • 4.93e3
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.93e3
  • 1.93e3
  • 2.13e3
  • 2.40e3
  • 4.65e3
  • 6.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000061anatomical structure
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
2.47e3
  • 2.47e3
  • 9.86e3
AEIR
  • AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
2.96e3
  • 2.96e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
3.29e3
  • 3.29e3
  • 4.23e3
  • 5.76e3
  • 6.58e3
  • 6.83e3
  • 6.91e3
  • 7.40e3
  • 7.89e3
  • 8.22e3
  • 8.63e3
  • 8.71e3
  • 8.88e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
3.51e3
  • 3.51e3
  • 4.99e3
  • 1.18e4
  • 1.21e4
  • 1.35e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
3.70e3
  • 3.70e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.78e3
  • 3.78e3
  • 5.07e3
  • 5.28e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
4.93e3
  • 4.93e3
  • 1.34e4
AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
4.93e3
  • 4.93e3
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004750blastoderm
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
4.93e3
  • 4.93e3
  • 4.93e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006240future forebrain
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
4.93e3
  • 4.93e3
  • 7.40e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.93e3
  • 4.93e3
  • 4.93e3
AEIR
  • AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
4.93e3
  • 4.93e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
4.93e3
  • 4.93e3
  • 1.37e4
AEIR
  • AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.34e3
  • 6.34e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0009611midbrain neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
7.40e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:0009616presumptive midbrain
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
7.40e3
  • 7.40e3
  • 7.40e3
AEIR
  • AEIR
  • AEIR
UBERON:0005424presumptive retinal pigmented epithelium
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
AEIR
  • AEIR
ZFA:0005757mid diencephalic organizer (Danio)
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:2001378axial hypoblast
  • ZFS:0000020Gastrula:75%-epiboly
8.88e3
  • 8.88e3
AEIR
  • AEIR
UBERON:2001431primitive olfactory epithelium
  • ZFS:0000029Pharyngula:Prim-5
8.88e3
  • 8.88e3
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
9.05e3
  • 9.05e3
  • 1.38e4
AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
9.86e3
  • 9.86e3
  • 1.11e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003056pre-chordal neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
9.86e3
  • 9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007284presumptive neural plate
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000015Blastula:Dome
9.86e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0008781blastodisc derived epiblast
  • ZFS:0000020Gastrula:75%-epiboly
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
9.87e3
  • 9.87e3
  • 1.02e4
  • 1.02e4
  • 1.37e4
  • 1.40e4
  • 1.41e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.01e4
  • 1.01e4
  • 1.06e4
AEIR
  • AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
1.08e4
  • 1.08e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.11e4
  • 1.11e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000025Segmentation:10-13 somites
1.11e4
  • 1.11e4
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0006238future brain
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.18e4
  • 1.18e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
1.23e4
  • 1.23e4
  • 1.28e4
  • 1.36e4
  • 1.46e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007046midbrain hindbrain boundary neural rod
  • ZFS:0000025Segmentation:10-13 somites
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000022Gastrula:Bud
1.27e4
  • 1.27e4
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000027Segmentation:20-25 somites
1.27e4
  • 1.27e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.35e4
  • 1.35e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000028Segmentation:26+ somites
1.39e4
  • 1.39e4
AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0005502rhombomere roof plate
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0010286midbrain neural tube
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0000573retinal cone cell
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0007281presumptive midbrain hindbrain boundary
  • ZFS:0000020Gastrula:75%-epiboly
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0009848zona limitans intrathalamica
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
CL:0000604retinal rod cell
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0009615midbrain hindbrain boundary neural plate
  • ZFS:0000022Gastrula:Bud
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0006603presumptive mesoderm
  • ZFS:0000019Gastrula:Shield
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.81e4
  • 1.81e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

Do not show this banner again