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D. rerio Gene: rnpc3 - ENSDARG00000011247 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011247
Namernpc3
DescriptionRNA-binding region (RNP1, RRM) containing 3 [Source:ZFIN;Acc:ZDB-GENE-060312-35]
OrganismDanio rerio (zebrafish)
Synonym(s)caliban, clbn, zgc:136847
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.37e3
  • 2.37e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.71e3
  • 2.71e3
90.93
  • 90.93
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
  • 5.55e3
90.81
  • 90.81
  • 81.41
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.84e3
  • 2.84e3
90.49
  • 90.49
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.20
  • 89.20
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.23e3
  • 3.23e3
  • 1.02e4
89.20
  • 89.20
  • 65.89
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.31
  • 88.31
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
3.65e3
  • 3.65e3
  • 5.39e3
  • 6.38e3
  • 6.41e3
  • 7.47e3
  • 8.25e3
  • 9.23e3
  • 9.57e3
  • 1.05e4
  • 1.07e4
87.78
  • 87.78
  • 81.94
  • 78.64
  • 78.55
  • 74.98
  • 72.37
  • 69.11
  • 67.96
  • 64.78
  • 64.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
3.72e3
  • 3.72e3
  • 4.52e3
  • 5.79e3
  • 5.80e3
  • 6.71e3
  • 7.52e3
87.53
  • 87.53
  • 84.87
  • 80.61
  • 80.59
  • 77.54
  • 74.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.07e3
  • 4.07e3
86.39
  • 86.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
4.90e3
  • 4.90e3
  • 1.12e4
  • 1.19e4
  • 1.24e4
83.60
  • 83.60
  • 62.50
  • 60.00
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.71
  • 82.71
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.17e3
  • 5.17e3
82.70
  • 82.70
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.44
  • 82.44
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
5.34e3
  • 5.34e3
  • 6.12e3
  • 6.61e3
  • 6.79e3
  • 8.00e3
  • 8.43e3
  • 9.48e3
  • 1.01e4
  • 1.02e4
  • 1.03e4
  • 1.03e4
  • 1.10e4
  • 1.16e4
  • 1.19e4
  • 1.20e4
  • 1.44e4
  • 1.46e4
  • 1.46e4
82.11
  • 82.11
  • 79.51
  • 77.85
  • 77.27
  • 73.20
  • 71.78
  • 68.26
  • 66.14
  • 65.97
  • 65.60
  • 65.38
  • 63.05
  • 61.10
  • 60.31
  • 59.88
  • 51.88
  • 51.12
  • 51.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.36e3
  • 5.36e3
  • 5.53e3
82.04
  • 82.04
  • 81.47
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
  • 7.12e3
  • 7.26e3
  • 9.24e3
81.95
  • 81.95
  • 76.18
  • 75.71
  • 69.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
5.49e3
  • 5.49e3
  • 5.75e3
  • 8.48e3
  • 1.12e4
  • 1.12e4
81.62
  • 81.62
  • 80.76
  • 71.60
  • 62.65
  • 62.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.94e3
  • 5.94e3
80.12
  • 80.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
79.80
  • 79.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.51e3
  • 6.51e3
78.20
  • 78.20
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.84e3
  • 6.84e3
77.11
  • 77.11
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.96e3
  • 6.96e3
76.69
  • 76.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.07e3
  • 7.07e3
  • 1.12e4
  • 1.28e4
  • 1.35e4
76.35
  • 76.35
  • 62.48
  • 57.13
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
9.30e3
  • 9.30e3
  • 9.49e3
  • 1.33e4
68.86
  • 68.86
  • 68.24
  • 55.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.76e3
  • 9.76e3
67.33
  • 67.33
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.08e4
66.67
  • 66.67
  • 63.90
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.27
  • 66.27
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.28e4
  • 1.37e4
62.50
  • 62.50
  • 61.10
  • 57.14
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.24e4
  • 1.24e4
  • 1.29e4
58.33
  • 58.33
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
  • 1.49e4
54.99
  • 54.99
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.40e4
54.53
  • 54.53
  • 53.10
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi14 species14 genesCompare expression
Bilateria18 species18 genesCompare expression

Orthology information comes from OMA : ENSDARG00000011247.

Cross-references

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