D. rerio Gene: trpm1a - ENSDARG00000011259 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011259
Nametrpm1a
Descriptiontransient receptor potential cation channel, subfamily M, member 1a [Source:ZFIN;Acc:ZDB-GENE-070112-1372]
OrganismDanio rerio (zebrafish)
Synonym(s)trpm1, trpm1b, zgc:158632

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.07e3
  • 4.07e3
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
8.81e3
  • 8.81e3
  • 1.31e4
  • 1.78e4
  • 1.88e4
  • 2.01e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
  • 1.50e4
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.15e4
  • 1.15e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
ZFA:0005491optic furrow (Danio)
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005424presumptive retinal pigmented epithelium
  • ZFS:0000029Pharyngula:Prim-5
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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