Gene: ncaldb - ENSDARG00000011334 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000011334
Name	ncaldb
Description	neurocalcin delta b [Source:ZFIN;Acc:ZDB-GENE-040808-37]
Organism	Danio rerio (zebrafish)
Synonym(s)	ncald, zgc:100982
Orthologs(s)	6 orthologs
Paralog(s)	49 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000966	retina	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000066fully formed stage	575 575 1.46e4	98.08 98.08 51.07	AEIR AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	623 623	97.92 97.92	AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	1.09e3 1.09e3 4.50e3	96.35 96.35 84.94	AEIR AEIR AEIR
UBERON:0002106	spleen	[+] 1 stage UBERON:0000066fully formed stage	3.26e3 3.26e3	89.09 89.09	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages ZFS:0000037Larval:Day 5 ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	3.34e3 3.34e3 1.54e4 1.58e4 1.82e4 2.05e4	88.82 88.82 48.37 47.20 39.09 31.48	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0002548	larva	[+] 2 stages ZFS:0000037Larval:Day 5 UBERON:0000069larval stage	4.60e3 4.60e3 1.73e4	84.61 84.61 41.91	AEIR AEIR AEIR
CL:0000094	granulocyte	[+] 1 stage UBERON:0000066fully formed stage	4.69e3 4.69e3	84.30 84.30	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	4.70e3 4.70e3	84.26 84.26	AEIR AEIR
UBERON:0000948	heart	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000036Larval:Day 4	5.53e3 5.53e3 1.43e4	81.49 81.49 52.07	AEIR AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	5.53e3 5.53e3	81.48 81.48	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	6.43e3 6.43e3	78.48 78.48	AEIR AEIR
UBERON:0000160	intestine	[+] 1 stage UBERON:0000066fully formed stage	8.55e3 8.55e3	71.39 71.39	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.03e4 1.03e4	65.54 65.54	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.49 60.49	AEIR AEIR
UBERON:0000019	camera-type eye	[+] 1 stage UBERON:0000066fully formed stage	1.18e4 1.18e4	60.48 60.48	AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.27e4 1.27e4	57.34 57.34	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	1.36e4 1.36e4	54.53 54.53	AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	1.45e4 1.45e4	51.31 51.31	AEIR AEIR
UBERON:0000468	multi-cellular organism	[+] 2 stages UBERON:0000066fully formed stage UBERON:0000068embryo stage	1.46e4 1.46e4 1.50e4	51.12 51.12 49.80	AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	1.54e4 1.54e4	48.35 48.35	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.71e4 1.71e4	42.85 42.85	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.83e4 1.83e4	38.75 38.75	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Bilateria	6 species Drosophila melanogaster (fruit fly) Drosophila ananassae Drosophila mojavensis Drosophila simulans Drosophila virilis Drosophila yakuba	6 genes FBgn0013303 Nca FBgn0100605 GF23611 FBgn0134095 GI11334 FBgn0186520 GD14847 FBgn0198847 GJ11590 FBgn0240423 GE23224	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000011334.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Chordata	3 genes ENSDARG00000018397 hpca ENSDARG00000022763 hpcal1 ENSDARG00000070688 ncalda	Compare expression	[+]
Opisthokonta	5 genes ENSDARG00000018397 hpca ENSDARG00000022763 hpcal1 ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000070688 ncalda	Compare expression	[+]
Eukaryota	49 genes ENSDARG00000008030 myl9b ENSDARG00000008494 myl6 ENSDARG00000009637 rcvrn3 ENSDARG00000010454 guca1a ENSDARG00000011400 tnnc1a ENSDARG00000011519 myl4 ENSDARG00000011825 cetn3 ENSDARG00000014196 myl1 ENSDARG00000015050 calm3a ENSDARG00000017441 mylz3 ENSDARG00000018397 hpca ENSDARG00000019096 myl7 ENSDARG00000019902 rcvrn2 ENSDARG00000021811 calm1a ENSDARG00000022763 hpcal1 ENSDARG00000023228 vsnl1a ENSDARG00000025326 myl12.2 ENSDARG00000025788 chp2 ENSDARG00000030758 guca1c ENSDARG00000031427 calm2a ENSDARG00000032976 cmlc1 ENSDARG00000033738 zgc:153867 ENSDARG00000034187 calm1b ENSDARG00000037539 tnnc1b ENSDARG00000038123 myl9a ENSDARG00000041215 cetn4 ENSDARG00000042245 myl13 ENSDARG00000044053 vsnl1b ENSDARG00000044629 guca1d ENSDARG00000052223 rcvrna ENSDARG00000052859 chp1 ENSDARG00000053424 myl2b ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000059257 RCVRN (1 to many) ENSDARG00000062592 myl10 ENSDARG00000069360 ppp3r1b ENSDARG00000070491 hpcal4 ENSDARG00000070688 ncalda ENSDARG00000070835 tnnc2 ENSDARG00000074057 calm3b ENSDARG00000074323 efcab2 ENSDARG00000092659 ppp3r1a ENSDARG00000095002 TNNC2 (1 to many) ENSDARG00000099712 MYL3 ENSDARG00000099766 myl12.1 ENSDARG00000100825 calm3a ENSDARG00000101510 cetn2 ENSDARG00000104722 MYL2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000011334.

Cross-references

Ensembl	ENSDARG00000011334 (ncaldb)
ZFIN	ZDB-GENE-040808-37 (ncaldb)
EMBL	BC079490, BX294657
Uniprot/SWISSPROT	NCLDB_DANRE, Q6AXL4