D. rerio Gene: fen1 - ENSDARG00000011404 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011404
Namefen1
Descriptionflap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
OrganismDanio rerio (zebrafish)
Synonym(s)cb879, q6drb5, q7zwh1
Orthologs(s)26 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
549
  • 549
98.17
  • 98.17
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
555
  • 555
98.14
  • 98.14
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
592
  • 592
  • 1.80e3
  • 5.42e3
  • 5.64e3
  • 1.36e4
98.02
  • 98.02
  • 93.99
  • 81.85
  • 81.11
  • 54.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
738
  • 738
  • 791
  • 1.19e3
  • 1.20e3
  • 1.62e3
97.53
  • 97.53
  • 97.35
  • 96.02
  • 95.99
  • 94.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
750
  • 750
  • 1.56e3
  • 1.56e3
  • 1.61e3
  • 1.71e3
  • 2.03e3
97.49
  • 97.49
  • 94.78
  • 94.77
  • 94.62
  • 94.27
  • 93.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
802
  • 802
  • 802
  • 897
  • 985
  • 1.02e3
  • 1.06e3
  • 1.42e3
  • 1.58e3
  • 2.54e3
  • 4.78e3
97.32
  • 97.32
  • 97.32
  • 97.00
  • 96.71
  • 96.58
  • 96.46
  • 95.25
  • 94.72
  • 91.51
  • 84.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
965
  • 965
  • 999
  • 1.08e3
  • 1.11e3
  • 1.12e3
  • 1.19e3
  • 1.46e3
  • 1.86e3
  • 2.83e3
  • 2.90e3
  • 3.46e3
  • 4.09e3
  • 4.77e3
  • 7.84e3
96.77
  • 96.77
  • 96.66
  • 96.37
  • 96.28
  • 96.26
  • 96.03
  • 95.11
  • 93.77
  • 90.53
  • 90.30
  • 88.43
  • 86.31
  • 84.04
  • 73.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.05e3
  • 1.05e3
96.47
  • 96.47
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.10e3
  • 1.10e3
96.33
  • 96.33
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.43e3
  • 1.43e3
  • 9.81e3
95.23
  • 95.23
  • 67.15
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.47e3
  • 1.47e3
95.08
  • 95.08
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.78
  • 94.78
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
  • 8.40e3
94.26
  • 94.26
  • 71.89
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.76e3
  • 1.76e3
94.11
  • 94.11
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.98e3
  • 1.98e3
93.37
  • 93.37
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.27
  • 92.27
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.45e3
  • 2.45e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.68e3
  • 2.68e3
91.05
  • 91.05
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
  • 1.23e4
90.18
  • 90.18
  • 58.92
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
  • 7.26e3
89.16
  • 89.16
  • 75.70
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.69
  • 88.69
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
4.31e3
  • 4.31e3
  • 4.45e3
  • 5.24e3
85.56
  • 85.56
  • 85.11
  • 82.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.54e3
  • 4.54e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.16e3
  • 6.16e3
79.39
  • 79.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.44e3
  • 6.44e3
78.45
  • 78.45
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.04
  • 78.04
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.73e3
  • 6.73e3
77.47
  • 77.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.25e3
  • 7.25e3
75.73
  • 75.73
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
8.04e3
  • 8.04e3
  • 9.25e3
  • 9.67e3
  • 9.67e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
73.07
  • 73.07
  • 69.03
  • 67.63
  • 67.63
  • 67.48
  • 66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.05e3
  • 9.05e3
69.69
  • 69.69
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.54
  • 69.54
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.34e3
  • 9.34e3
68.71
  • 68.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000011404.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011404.

Cross-references

EnsemblENSDARG00000011404 (fen1)
ZFINZDB-GENE-031112-11 (fen1)
EMBLAY391423, AY648844, BC049413, BC071488
Uniprot/SWISSPROTFEN1A_DANRE, Q6TNU4

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