D. rerio Gene: col2a1b - ENSDARG00000011407 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011407
Namecol2a1b
Descriptioncollagen, type II, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-050302-9]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6788778, zmp:0000000538

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
127
  • 127
  • 249
  • 307
  • 457
  • 561
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
795
  • 795
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.23e3
  • 1.23e3
  • 3.82e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e3
  • 1.63e3
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.85e3
  • 1.85e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.98e3
  • 1.98e3
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
AEIR
  • AEIR
UBERON:2001069ventral fin fold
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.16e3
  • 8.16e3
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
AEIR
  • AEIR
UBERON:0004753scapulocoracoid
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCABZ01072241, CABZ01072242, CABZ01072243, CABZ01072244, CABZ01072245, CABZ01072246, CABZ01072247, CABZ01072248, CABZ01072249, FP326665
EnsemblENSDARG00000011407 (col2a1b)
Uniprot/SPTREMBLA0A0H2UKU2, A0A0H2UKU2_DANRE, F1QP85, F1QP85_DANRE
ZFINZDB-GENE-050302-9 (col2a1b)

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