D. rerio Gene: col2a1b - ENSDARG00000011407 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011407
Namecol2a1b
Descriptioncollagen, type II, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-050302-9]
OrganismDanio rerio (zebrafish)
Synonym(s)im:6788778, zmp:0000000538
Orthologs(s)18 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
127
  • 127
  • 229
  • 307
  • 457
  • 561
99.58
  • 99.58
  • 99.24
  • 98.98
  • 98.47
  • 98.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
197
  • 197
  • 351
99.34
  • 99.34
  • 98.83
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
795
  • 795
97.34
  • 97.34
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
833
  • 833
  • 9.77e3
97.21
  • 97.21
  • 67.28
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
96.42
  • 96.42
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.23e3
  • 1.23e3
  • 3.82e3
  • 1.12e4
95.88
  • 95.88
  • 87.21
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.57
  • 94.57
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.98e3
  • 1.98e3
93.36
  • 93.36
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.38e3
  • 3.38e3
88.68
  • 88.68
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
4.13e3
  • 4.13e3
  • 1.39e4
86.17
  • 86.17
  • 53.34
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.65e3
  • 6.65e3
77.75
  • 77.75
AEIR
  • AEIR
UBERON:2001069ventral fin fold
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0011610ceratohyal cartilage
  • ZFS:0000038Larval:Day 6
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.42e3
  • 9.42e3
68.47
  • 68.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.25
  • 66.25
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.06
  • 60.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.24e4
  • 1.24e4
58.53
  • 58.53
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000033Hatching:Long-pec
1.29e4
  • 1.29e4
56.65
  • 56.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.33e4
  • 1.33e4
  • 1.40e4
55.35
  • 55.35
  • 53.20
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:2005316fin fold pectoral fin bud
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.37
  • 52.37
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.98
  • 50.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.59
  • 50.59
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.37
  • 50.37
AEIR
  • AEIR
UBERON:0004753scapulocoracoid
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.03
  • 45.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata4 genesCompare expression
Bilateria6 genesCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000011407.

Cross-references

EnsemblENSDARG00000011407 (col2a1b)
ZFINZDB-GENE-050302-9 (col2a1b)
EMBLCABZ01072241, CABZ01072242, CABZ01072243, CABZ01072244, CABZ01072245, CABZ01072246, CABZ01072247, CABZ01072248, CABZ01072249, FP326665
Uniprot/SPTREMBLA0A0H2UKU2, A0A0H2UKU2_DANRE, F1QP85, F1QP85_DANRE

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