D. rerio Gene: ryr1a - ENSDARG00000011422 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011422
Nameryr1a
Descriptionryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
OrganismDanio rerio (zebrafish)
Synonym(s)ryanodine receptor 1a (slow muscle), ryr1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.25e3
  • 9.25e3
  • 9.86e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
  • 1.08e4
  • 1.19e4
  • 1.40e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
1.30e4
  • 1.30e4
  • 1.31e4
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.30e4
  • 1.30e4
  • 1.30e4
  • 1.36e4
  • 1.38e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000011422 (ryr1a)
Uniprot/SPTREMBLF1QCK4, F1QCK4_DANRE, F1QHJ8, F1QHJ8_DANRE
ZFINZDB-GENE-020108-2 (ryr1a)

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