D. rerio Gene: ryr1a - ENSDARG00000011422 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011422
Nameryr1a
Descriptionryanodine receptor 1a (skeletal) [Source:ZFIN;Acc:ZDB-GENE-020108-2]
OrganismDanio rerio (zebrafish)
Synonym(s)ryanodine receptor 1a (slow muscle), ryr1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.34458
  • 70.34458
AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.25e3
  • 9.25e3
  • 9.86e3
  • 1.48e4
68.74493
  • 68.74493
  • 66.66666
  • 49.99493
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.91e3
  • 9.91e3
66.52527
  • 66.52527
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.06e4
  • 1.06e4
  • 1.08e4
  • 1.19e4
  • 1.40e4
  • 1.40e4
64.15980
  • 64.15980
  • 63.62192
  • 59.81275
  • 52.55552
  • 52.55404
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
56.94276
  • 56.94276
AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
1.30e4
  • 1.30e4
  • 1.31e4
56.22973
  • 56.22973
  • 55.86038
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.30e4
  • 1.30e4
  • 1.30e4
  • 1.36e4
  • 1.38e4
56.21790
  • 56.21790
  • 56.21790
  • 54.13286
  • 53.40601
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.53149
  • 50.53149
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
46.54995
  • 46.54995
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.19862
  • 39.19862
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.25600
  • 38.25600
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.11342
  • 37.11342
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
26.87205
  • 26.87205
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000011422 (ryr1a)
Uniprot/SPTREMBLF1QCK4, F1QCK4_DANRE, F1QHJ8, F1QHJ8_DANRE
ZFINZDB-GENE-020108-2 (ryr1a)

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