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D. rerio Gene: scube3 - ENSDARG00000011490 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011490
Namescube3
Descriptionsignal peptide, CUB domain, EGF-like 3 [Source:ZFIN;Acc:ZDB-GENE-060717-1]
OrganismDanio rerio (zebrafish)
Orthologs(s)18 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
2.55e3
  • 2.55e3
  • 6.54e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.91e3
  • 8.96e3
91.46
  • 91.46
  • 78.12
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 73.52
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000106zygote stage
  • UBERON:00072322 cell stage
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.12e4
  • 1.12e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
62.50
  • 62.50
  • 54.97
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.19e4
  • 1.19e4
  • 1.38e4
60.31
  • 60.31
  • 53.85
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.70
  • 58.70
AEIR
  • AEIR
UBERON:0003089sclerotome
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.25e4
  • 1.25e4
58.31
  • 58.31
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.79
  • 56.79
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.31e4
  • 1.49e4
56.65
  • 56.65
  • 56.23
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.30e4
  • 1.30e4
56.49
  • 56.49
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.30e4
  • 1.30e4
  • 1.69e4
56.31
  • 56.31
  • 43.39
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000028Segmentation:26+ somites
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
  • 1.32e4
  • 1.34e4
56.23
  • 56.23
  • 55.97
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.33e4
  • 1.33e4
  • 1.37e4
  • 1.47e4
  • 1.48e4
  • 1.73e4
55.48
  • 55.48
  • 54.22
  • 50.85
  • 50.42
  • 41.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.33e4
  • 1.33e4
55.36
  • 55.36
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
1.33e4
  • 1.33e4
  • 1.34e4
  • 1.49e4
  • 1.49e4
55.36
  • 55.36
  • 54.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.99
  • 54.99
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.65
  • 53.65
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000028Segmentation:26+ somites
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000028Segmentation:26+ somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.53e4
  • 1.53e4
  • 1.67e4
48.62
  • 48.62
  • 43.91
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.36
  • 47.36
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.60e4
  • 1.60e4
  • 1.70e4
46.54
  • 46.54
  • 42.99
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.61e4
  • 1.61e4
45.99
  • 45.99
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.83
  • 45.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.74
  • 45.74
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.71
  • 45.71
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.64e4
  • 1.64e4
45.10
  • 45.10
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.65
  • 41.65
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.35
  • 38.35
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.03
  • 32.03
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.68
  • 30.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000011490.

Cross-references

EnsemblENSDARG00000011490 (scube3)
ZFINZDB-GENE-060717-1 (scube3)
EMBLCABZ01056809, CABZ01056810, CABZ01056811, CABZ01056812, CABZ01056813, CABZ01056814, CABZ01056815, CABZ01056816, CABZ01056817, CABZ01056818
Uniprot/SPTREMBLF1R0I7, F1R0I7_DANRE

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