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D. rerio Gene: si:ch211-212o1.2 - ENSDARG00000011498 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011498
Namesi:ch211-212o1.2
Descriptionsi:ch211-212o1.2 [Source:ZFIN;Acc:ZDB-GENE-041111-310]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7152497
Orthologs(s)7 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
95.78
  • 95.78
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.63
  • 95.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.48e3
  • 1.48e3
  • 1.70e3
95.04
  • 95.04
  • 94.32
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.15e3
  • 2.15e3
92.82
  • 92.82
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.16e3
  • 3.16e3
89.43
  • 89.43
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
3.32e3
  • 3.32e3
  • 8.89e3
  • 1.15e4
  • 1.16e4
  • 1.16e4
  • 1.18e4
  • 1.18e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.47e4
  • 1.50e4
  • 1.50e4
88.87
  • 88.87
  • 70.22
  • 61.44
  • 61.06
  • 61.06
  • 60.52
  • 60.36
  • 59.58
  • 59.49
  • 59.48
  • 59.10
  • 59.04
  • 59.02
  • 58.50
  • 50.68
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
3.48e3
  • 3.48e3
  • 1.15e4
  • 1.17e4
88.35
  • 88.35
  • 61.54
  • 60.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.59e3
  • 3.59e3
  • 1.06e4
  • 1.49e4
87.98
  • 87.98
  • 64.53
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
  • 3.97e3
86.77
  • 86.77
  • 86.70
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.98e3
  • 4.98e3
  • 6.68e3
  • 6.90e3
  • 7.78e3
  • 7.86e3
83.34
  • 83.34
  • 77.65
  • 76.89
  • 73.96
  • 73.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.03e3
  • 5.03e3
83.16
  • 83.16
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.05e3
  • 5.05e3
83.08
  • 83.08
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.07e3
  • 5.07e3
83.04
  • 83.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.11e3
  • 5.11e3
82.88
  • 82.88
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.57
  • 82.57
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.80
  • 81.80
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.86e3
  • 5.86e3
80.38
  • 80.38
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.72
  • 79.72
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.62
  • 76.62
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.13e3
  • 7.13e3
  • 1.09e4
76.13
  • 76.13
  • 63.66
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
7.41e3
  • 7.41e3
  • 8.47e3
  • 8.95e3
  • 9.58e3
  • 9.70e3
  • 1.11e4
  • 1.11e4
  • 1.13e4
  • 1.13e4
  • 1.22e4
75.20
  • 75.20
  • 71.65
  • 70.03
  • 67.93
  • 67.53
  • 62.85
  • 62.67
  • 62.08
  • 62.05
  • 59.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.77e3
  • 7.77e3
74.00
  • 74.00
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.94e3
  • 7.94e3
  • 8.41e3
  • 9.97e3
73.42
  • 73.42
  • 71.84
  • 66.62
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
72.30
  • 72.30
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.45e3
  • 8.45e3
71.72
  • 71.72
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.40e3
  • 9.40e3
68.52
  • 68.52
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
9.80e3
  • 9.80e3
  • 1.01e4
  • 1.01e4
  • 1.12e4
  • 1.13e4
  • 1.15e4
67.19
  • 67.19
  • 66.34
  • 66.15
  • 62.66
  • 62.22
  • 61.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.06
  • 62.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.97
  • 60.97
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.17e4
  • 1.17e4
60.82
  • 60.82
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Orthology information comes from OMA : ENSDARG00000011498.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000011498.

Cross-references

EnsemblENSDARG00000011498 (si:ch211-212o1.2)
ZFINZDB-GENE-041111-310 (si:ch211-212o1.2)
EMBLCR387935
Uniprot/SPTREMBLF1RDM1, F1RDM1_DANRE, Q1L945, Q1L945_DANRE, Q1L946, Q1L946_DANRE

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