D. rerio Gene: sema6dl - ENSDARG00000011533 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011533
Namesema6dl
Descriptionsema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-278n20.1, zgc:112012
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.13e3
  • 1.13e3
  • 1.74e3
96.20
  • 96.20
  • 94.17
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
  • 4.74e3
95.27
  • 95.27
  • 84.14
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.48e3
  • 1.48e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.91
  • 94.91
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.52e3
  • 1.52e3
  • 1.69e3
  • 1.79e3
  • 1.80e3
  • 2.12e3
94.90
  • 94.90
  • 94.33
  • 94.02
  • 93.96
  • 92.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.70e3
  • 1.70e3
  • 2.55e3
94.31
  • 94.31
  • 91.46
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.74e3
  • 1.74e3
  • 1.53e4
94.19
  • 94.19
  • 48.73
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.96e3
  • 1.96e3
93.43
  • 93.43
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.07e3
  • 2.07e3
93.06
  • 93.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
92.39
  • 92.39
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
90.70
  • 90.70
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.99
  • 86.99
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.09e3
  • 4.09e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.52
  • 83.52
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
  • 7.70e3
80.91
  • 80.91
  • 74.21
AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
6.72e3
  • 6.72e3
  • 7.91e3
  • 8.40e3
77.49
  • 77.49
  • 73.52
  • 71.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
6.97e3
  • 6.97e3
  • 8.54e3
  • 1.24e4
76.66
  • 76.66
  • 71.42
  • 58.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
  • 1.50e4
  • 1.50e4
76.46
  • 76.46
  • 49.92
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
7.08e3
  • 7.08e3
  • 9.25e3
  • 9.44e3
  • 9.44e3
  • 1.05e4
  • 1.08e4
  • 1.08e4
  • 1.37e4
76.30
  • 76.30
  • 69.03
  • 68.40
  • 68.40
  • 64.69
  • 63.87
  • 63.87
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
76.08
  • 76.08
AEIR
  • AEIR
UBERON:0002531paired fin bud
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 8.15e3
  • 1.07e4
  • 1.09e4
  • 1.09e4
  • 1.16e4
  • 1.16e4
75.00
  • 75.00
  • 72.72
  • 64.28
  • 63.63
  • 63.63
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
8.65e3
  • 8.65e3
  • 1.31e4
71.04
  • 71.04
  • 56.22
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000026Segmentation:14-19 somites
8.71e3
  • 8.71e3
70.82
  • 70.82
AEIR
  • AEIR
UBERON:2007025midbrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.71e3
  • 8.71e3
  • 8.71e3
  • 8.71e3
70.82
  • 70.82
  • 70.82
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.83e3
  • 8.83e3
  • 9.34e3
  • 9.34e3
70.44
  • 70.44
  • 68.73
  • 68.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.27
  • 70.27
AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.44e3
  • 9.44e3
69.98
  • 69.98
  • 68.40
  • 68.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
9.13e3
  • 9.13e3
  • 9.19e3
  • 9.67e3
  • 9.67e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
69.43
  • 69.43
  • 69.22
  • 67.63
  • 67.63
  • 66.65
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.13e3
  • 9.13e3
  • 9.67e3
  • 9.67e3
  • 1.03e4
  • 1.05e4
  • 1.12e4
  • 1.12e4
69.43
  • 69.43
  • 67.63
  • 67.63
  • 65.61
  • 64.69
  • 62.48
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.19e3
  • 9.19e3
  • 1.03e4
69.22
  • 69.22
  • 65.61
AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.44e3
  • 9.44e3
  • 9.44e3
  • 9.96e3
68.40
  • 68.40
  • 68.40
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.02e4
  • 1.05e4
  • 1.25e4
67.48
  • 67.48
  • 65.89
  • 65.77
  • 64.98
  • 58.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.02e4
66.65
  • 66.65
  • 65.77
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.50
  • 66.50
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
  • 1.12e4
62.50
  • 62.50
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.18e4
  • 1.18e4
  • 1.26e4
  • 1.28e4
  • 1.29e4
  • 1.29e4
  • 1.31e4
60.50
  • 60.50
  • 57.87
  • 57.13
  • 56.65
  • 56.65
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.07
  • 60.07
AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
  • 1.49e4
55.55
  • 55.55
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.38e4
  • 1.38e4
53.66
  • 53.66
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.83
  • 51.83
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.12
  • 51.12
AEIR
  • AEIR
UBERON:0003110otic region
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007012lateral forebrain bundle
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005362vagus X ganglion
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.51
  • 35.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000011533 (sema6dl)
ZFINZDB-GENE-050417-171 (sema6dl)
EMBLAB212073, AB212074, BC093159, BX323575
Uniprot/SPTREMBLA3KPS3, A3KPS3_DANRE, A3KPS4, A3KPS4_DANRE, F1QG92, F1QG92_DANRE, F1QSD1, F1QSD1_DANRE, Q567I7, Q567I7_DANRE

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