D. rerio Gene: pou6f1 - ENSDARG00000011570 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011570
Namepou6f1
DescriptionPOU class 6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-530]
OrganismDanio rerio (zebrafish)
Synonym(s)b3dfr1, pou[c], pouc
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.94e3
  • 4.94e3
83.47
  • 83.47
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.85e3
  • 6.85e3
77.07
  • 77.07
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.17
  • 75.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.84e3
  • 7.84e3
73.76
  • 73.76
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
  • 1.58e4
73.20
  • 73.20
  • 47.24
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
8.15e3
  • 8.15e3
  • 8.52e3
  • 9.75e3
  • 9.98e3
  • 1.04e4
  • 1.28e4
  • 1.29e4
  • 1.33e4
  • 1.37e4
  • 1.40e4
72.70
  • 72.70
  • 71.47
  • 67.34
  • 66.60
  • 65.33
  • 57.06
  • 56.89
  • 55.35
  • 54.03
  • 53.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
8.21e3
  • 8.21e3
  • 1.18e4
  • 1.29e4
72.51
  • 72.51
  • 60.66
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.30e3
  • 8.30e3
  • 1.07e4
  • 1.09e4
  • 1.17e4
  • 1.32e4
72.19
  • 72.19
  • 64.13
  • 63.56
  • 60.87
  • 55.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.27
  • 71.27
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.58e3
  • 8.58e3
  • 1.22e4
71.27
  • 71.27
  • 59.23
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.84e3
  • 9.84e3
67.05
  • 67.05
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.41
  • 66.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.75
  • 65.75
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.02e4
  • 1.02e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.22e4
  • 1.23e4
  • 1.24e4
  • 1.24e4
  • 1.27e4
  • 1.30e4
  • 1.32e4
  • 1.32e4
65.68
  • 65.68
  • 60.63
  • 59.78
  • 59.76
  • 59.65
  • 59.33
  • 59.01
  • 58.85
  • 58.47
  • 58.40
  • 57.54
  • 56.43
  • 55.95
  • 55.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.52
  • 64.52
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.06e4
  • 1.06e4
64.47
  • 64.47
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
1.14e4
  • 1.14e4
  • 1.23e4
  • 1.34e4
  • 1.43e4
  • 1.68e4
61.83
  • 61.83
  • 58.86
  • 55.12
  • 52.27
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.18
  • 61.18
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
  • 1.19e4
60.31
  • 60.31
  • 60.04
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.30
  • 60.30
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
59.94
  • 59.94
  • 59.56
  • 59.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.51
  • 58.51
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.92
  • 56.92
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.20
  • 56.20
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.08
  • 55.08
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.61
  • 54.61
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.61
  • 54.61
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.52
  • 47.52
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000011570 (pou6f1)
ZFINZDB-GENE-980526-530 (pou6f1)
EMBLBC162134, BC162146, CR354542, X68432
Uniprot/SPTREMBLE9QE86, E9QE86_DANRE
Uniprot/SWISSPROTP31367, PO6F1_DANRE

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