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D. rerio Gene: sox5 - ENSDARG00000011582 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000011582
Namesox5
DescriptionSRY (sex determining region Y)-box 5 [Source:ZFIN;Acc:ZDB-GENE-000607-13]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd5067, si:dkey-215a8.1, sox5b
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
671
  • 671
  • 2.72e3
  • 3.48e3
  • 9.77e3
97.76
  • 97.76
  • 90.89
  • 88.35
  • 67.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
908
  • 908
96.96
  • 96.96
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.46e3
  • 1.46e3
95.11
  • 95.11
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.56e3
  • 1.56e3
  • 1.74e3
  • 2.09e3
  • 2.64e3
  • 2.74e3
  • 2.79e3
  • 3.23e3
  • 4.04e3
  • 4.99e3
  • 5.16e3
  • 6.61e3
  • 7.73e3
  • 1.14e4
  • 1.28e4
  • 1.37e4
  • 1.50e4
  • 1.50e4
94.77
  • 94.77
  • 94.17
  • 93.02
  • 91.17
  • 90.82
  • 90.67
  • 89.20
  • 86.47
  • 83.31
  • 82.72
  • 77.86
  • 74.12
  • 61.75
  • 57.15
  • 53.98
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
1.58e3
  • 1.58e3
  • 1.07e4
  • 1.12e4
94.70
  • 94.70
  • 64.20
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
2.19e3
  • 2.19e3
  • 3.46e3
  • 3.48e3
  • 4.24e3
  • 4.50e3
  • 4.69e3
  • 4.74e3
  • 4.82e3
  • 4.98e3
  • 6.22e3
92.66
  • 92.66
  • 88.41
  • 88.34
  • 85.82
  • 84.95
  • 84.29
  • 84.12
  • 83.87
  • 83.31
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.67e3
  • 2.67e3
  • 3.42e3
  • 4.96e3
91.05
  • 91.05
  • 88.54
  • 83.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
3.41e3
  • 3.41e3
  • 7.71e3
  • 1.12e4
88.58
  • 88.58
  • 74.17
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.58e3
  • 3.58e3
  • 4.97e3
88.03
  • 88.03
  • 83.36
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.25e3
  • 4.25e3
85.76
  • 85.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.32
  • 85.32
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
5.43e3
  • 5.43e3
  • 7.47e3
  • 9.19e3
  • 1.18e4
81.81
  • 81.81
  • 74.99
  • 69.22
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.93e3
  • 5.93e3
80.15
  • 80.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
6.23e3
  • 6.23e3
  • 7.97e3
  • 1.02e4
  • 1.03e4
  • 1.42e4
79.15
  • 79.15
  • 73.32
  • 65.71
  • 65.55
  • 52.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
78.33
  • 78.33
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.42e3
  • 7.42e3
75.15
  • 75.15
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
7.91e3
  • 7.91e3
  • 8.30e3
  • 9.19e3
  • 9.67e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
73.52
  • 73.52
  • 72.21
  • 69.22
  • 67.63
  • 66.65
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.97e3
  • 7.97e3
  • 8.40e3
73.32
  • 73.32
  • 71.86
AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.04e3
  • 8.04e3
  • 8.15e3
  • 8.71e3
  • 8.71e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
73.07
  • 73.07
  • 72.72
  • 70.82
  • 70.82
  • 70.82
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
  • 1.32e4
72.64
  • 72.64
  • 55.94
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.21e3
  • 8.21e3
72.51
  • 72.51
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.36e3
  • 8.36e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
9.19e3
  • 9.19e3
  • 1.03e4
  • 1.03e4
  • 1.05e4
69.22
  • 69.22
  • 65.61
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.61e3
  • 9.61e3
67.82
  • 67.82
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.83e3
  • 9.83e3
67.07
  • 67.07
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.62
  • 66.62
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.02e4
  • 1.02e4
  • 1.05e4
65.77
  • 65.77
  • 64.69
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.03e4
  • 1.03e4
  • 1.05e4
65.61
  • 65.61
  • 64.69
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
  • 1.09e4
65.19
  • 65.19
  • 63.61
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.05e4
  • 1.05e4
  • 1.10e4
64.98
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.13
  • 64.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.29
  • 62.29
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.89
  • 60.89
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.17e4
  • 1.17e4
  • 1.26e4
  • 1.26e4
60.70
  • 60.70
  • 57.68
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.18e4
  • 1.18e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.96
  • 59.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.20e4
  • 1.20e4
  • 1.24e4
  • 1.37e4
59.71
  • 59.71
  • 58.47
  • 54.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.84
  • 55.84
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.64
  • 55.64
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.38e4
  • 1.38e4
53.91
  • 53.91
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.62e4
  • 1.62e4
45.60
  • 45.60
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.81
  • 38.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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